| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_3937 |
|---|
| Symbol | |
|---|
| ID | 8885137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | - |
|---|
| Start bp | 4201455 |
|---|
| End bp | 4202018 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003512683 |
|---|
| Protein GI | 291301405 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00797355 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAAC CCACGGCCAG CACCGACCGC AGGCAACAGC TGGTGGAGGC CGCCTTCGAC
GAGATCGCCG CCAACGGCTT CGAGGGCCTG CGCACCCGCG CGGTGGCCCG CGCCGTCGGC
ATCGACCACT CCACCGTCCA CCACCACTTC GCCACCAAGG CCGACCTGAT CGCGGCCGTC
GTCGACCACG CGATCGCCCC GTTCCGCACC GGCAAACCAC TCACCGGCAG CCCCGCCGAG
CAGCTGCGCG ATCACCTCAA CCTGTTGGTA CGCCTCATGC GTGAGCGTCC CCGCCTGTTC
ATCGTCCTGC GTGAACTCGA CCTGCGCGCG ACCCGCGACG ACAACATCCG CGCCATTTTG
GCCGAACGCG ACAACCGGTG GCGCGACACC ACGACCACCC TGTTCCGCCA ACCCGGCTGG
CACTCCGACA CCGACCCCGA GGCCGCCGCC GAACTGGTGA TCGCGGCCGT CAAGGGCGCT
TCCTTCGCAC CCGACCCCGA TCGCGCCGCC GCGGCCATCG ACGAGTTGCT GCGGCTGCTG
ACTCCCCGTG AGGAACGACC ATGA
|
|---|
| Protein sequence | MPKPTASTDR RQQLVEAAFD EIAANGFEGL RTRAVARAVG IDHSTVHHHF ATKADLIAAV
VDHAIAPFRT GKPLTGSPAE QLRDHLNLLV RLMRERPRLF IVLRELDLRA TRDDNIRAIL
AERDNRWRDT TTTLFRQPGW HSDTDPEAAA ELVIAAVKGA SFAPDPDRAA AAIDELLRLL
TPREERP
|
|---|
| |