| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_3560 |
|---|
| Symbol | |
|---|
| ID | 8884759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | - |
|---|
| Start bp | 3771981 |
|---|
| End bp | 3773399 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | Integrin alpha beta-propellor repeat protein |
|---|
| Protein accession | YP_003512315 |
|---|
| Protein GI | 291301037 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTAC CGGCTTCAGC CGGAGATCAC ATAACCGACC CCATCGACGA CTTCGACTGC
GACGACCAGC GAGACGCCGT CGATCCCGAT CGATACGCCA CGGTCAACGG TCACACGAAC
GCCGGGGCCA TCACGATCCA AGTCAGCGGC GACGGCGGGA TCATGACATT GACACAGGCG
AGTCCGGGCA TAGCGGGAGG CCCAGAAGAG GATGACCTCT TCAGTTCCAT CTACACCTCG
TTCGACGACA ACGGCGACGG CTGCGACGAT CTCGTCATCG CGGCACCGTT CGAGGACCTG
GTGGCCGGCA ACGGTTCCGA AGCGACGGAC GCCGGAATGA TCTGGATCGT GCCCGGCTCC
CCCGACGGAC TGCGGCCCGA AGAATCCCGC GCCGTTAACC TGCACACCCC GGGGATCCCC
GGCGCGGTAG GGAAATTCCA TCGCTTCGGT CTGTCCTTGG CGGGCGGCAA CACCATCACC
CACGAGCCGT ATCTGCTGAT CGGCGCTCCG GGCTACACCG TCGGCAAAAC CGGATACGCC
GCCGGAGCCG TGTACTACGC ACGGGGCGAC GAGACGTATC AGTTGACACA GGACAGTTCG
GGTGTACCGG GAGTGGCCGA GCCCAGAGAC TACTTCGGGG AGTACATCGT CGCCACCAAC
CGGTACATCG CGGTCAGCGC TCCCGGAGAG GCCATTGGAG ACAGATCCAG TTCCGGTATG
GTGCATGTCT TCATCCACAC GATCACCGAC GCTCACCTCA GGTCGCTGAG CAGTTTCCAC
CAAAACACCG ACGGGATTTA CGGTGTCGCG GAGTCCGGTG ACCGGTTCGG GGGTTCACTG
TCGATCATCA ACTACCAGCA CACGCTCGAT GCTCCGATCG GCGCCGCGAT CTCGGTGGGT
ACTCCGGGCG AACAGGTCGG TGCCGGTGGC AGGACCTACA ACGGCATGGC ACACCTGATA
CGGCACGACA ACACCGGAGA GCCGGTGCAG CAGTCCTATG TGCATCAGGA TCTGCCGGGT
GTCGACGGGA TAGTCGAGGT CCACGACAGG TTCGGCTTCA ACACCGTCGT GAGCGCCACC
ACGTCGTCAG ATATCGGTAC ACCGTCGACG ACGGCCTGGA CTGTCGCATC CTGGGAACTG
CCCGACGAGG ACGGCGGTGA CGGCTACAAC GACCCGCAGG TACAGGTCTT CCCCGCGACG
GGCGATCCCG GCGACAACGA CCACACCATC GCCCACGACG ACTACGGCCT GCCGCTGCTG
ACCGTCCAGG ACATCGAATC GCTCCAGGCC AGCTACACCT ACCTCTACAT AGGAGTACCC
GGGCTTCCCG GACAACCGTC CGAGGTCTAC GGGATCCCGT GGCAGAACGT GCTGGGCGGC
CAAAACGCAC CCGTCATCAA GATCCGCGTC CAGCCGTAA
|
|---|
| Protein sequence | MAVPASAGDH ITDPIDDFDC DDQRDAVDPD RYATVNGHTN AGAITIQVSG DGGIMTLTQA
SPGIAGGPEE DDLFSSIYTS FDDNGDGCDD LVIAAPFEDL VAGNGSEATD AGMIWIVPGS
PDGLRPEESR AVNLHTPGIP GAVGKFHRFG LSLAGGNTIT HEPYLLIGAP GYTVGKTGYA
AGAVYYARGD ETYQLTQDSS GVPGVAEPRD YFGEYIVATN RYIAVSAPGE AIGDRSSSGM
VHVFIHTITD AHLRSLSSFH QNTDGIYGVA ESGDRFGGSL SIINYQHTLD APIGAAISVG
TPGEQVGAGG RTYNGMAHLI RHDNTGEPVQ QSYVHQDLPG VDGIVEVHDR FGFNTVVSAT
TSSDIGTPST TAWTVASWEL PDEDGGDGYN DPQVQVFPAT GDPGDNDHTI AHDDYGLPLL
TVQDIESLQA SYTYLYIGVP GLPGQPSEVY GIPWQNVLGG QNAPVIKIRV QP
|
|---|
| |