Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_1552 |
Symbol | |
ID | 8882741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | + |
Start bp | 1632382 |
End bp | 1633782 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | |
Product | type III effector Hrp-dependent outers |
Protein accession | YP_003510348 |
Protein GI | 291299070 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAGC CCCCGTTGGT CGGGGCGATC GCCGACGACG TCACCGGCGC GACCGACGTC GCGGTCGCGT TCCGCCGCAA CGGATTGCGG ACGTTCCTGT CGTTCGGGGT GTCTCCCGGG CTCGACGTCG GTGCCGAGAC CGTGGTGGTC GCGTTGAAGA CGCGGATGAT CGAACCGGAT GCGGCGGTGG CGCAGTCCCG AGCGGCGTGG GACTGGCTGC GGCGGTTGGG TGCGCGACGG GTCTACTTCA AGTACTGCTC CACGTTCGAC TCGACGTCGC GAGGCAATAT CGGCCCCGTT CTGGATGCTC TGGCGGATGC GACCGGGGCG GCGACGGTGG TGACCACGCC GTCGTCACCC GAGCATGGCC GCACCCAGTA CGAGGGGCAT CTGTTCGTCG GCGATGTCCT GTTGGCCGAG TCGCATATGC GCGACCATCC GGTGACCCCG ATGCGCGACT CGAACTTGCC TAGGCTGCTG CGAGCCCAGA CTCGTGAAAC CGTTGGGCTG CTTGGCTACC GTGACGTCCT CGACGGCGAG GCGGCTATCG CGCGGCGACT GGCGGCGGCG CGCGCTGACG GGGTGAGGTA TCTGCTCGCC GACGCCGTGA CCGACGCCGA TCTGCGGCGG CTTGGTCGTG TCGTGGCGAA CGAGCCGCTG ATGGCTGGTG CCGCGGGGCT GGCGGGTGGA ATCGCGGCGG CGCTGGCCGA AAAGCGCGGC GAAGCCGCCG CGCCGCTGGC TGCACGCAGC CCCGGCGAAA CTGCCGCGCC GCTGGCCGAT CGTCGCGACG AACCTGCGGC AGAGCTGGCC GCAGGCGGCC CCCGCGAAGC GATAAGTGCC GCTCCTCTTG AGCACCAAGC GCCCCCGCCC CCAACCGGAC CAGCCGTGGT GCTGTCGGGC AGCTGCTCGA AGCGCACCCT CGAACAAATC GCATACCTGC GACAGCACGA CCGGCCCGCG TTCTTCCTCG ACGTGTCCGC CACCCCCGAC GCCGCAGCCC TCGCCGACAC CGCGCTCGCC TGGTACGACA CGCTGCCCGC CGACGCCGCC CCGCTCATCT ACTCCTCGGT CGAACCCGAA CGGCTGCACC ACATCCAACA GCGGATCGGC GTCGAACGCG CGGCCGCGAT CCTCGAGGAC GCGACCGGCC GCATCGCCCA CGGACTGGCC GCACGGGGCG TCCGGCGGTT CATCGCCGCC GGAGGCGAGA CCTCCGGTGC CGTCGTCGCC GCGTTGCGAG TCGACGGTGG ACTCATCGGC ACCGAAGCGG CCCGAGGCGT CCCCTGGATC CACAGCCCGA CGGGCGATCT GAGCCTGCTG CTGAAGTCCG GCAACTTCGG CGAACCGGAC CTTCTGGCCC GCGCCTCGGC CTCGGGAGGC GACGATGTCC CCGCACGATG A
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Protein sequence | MTEPPLVGAI ADDVTGATDV AVAFRRNGLR TFLSFGVSPG LDVGAETVVV ALKTRMIEPD AAVAQSRAAW DWLRRLGARR VYFKYCSTFD STSRGNIGPV LDALADATGA ATVVTTPSSP EHGRTQYEGH LFVGDVLLAE SHMRDHPVTP MRDSNLPRLL RAQTRETVGL LGYRDVLDGE AAIARRLAAA RADGVRYLLA DAVTDADLRR LGRVVANEPL MAGAAGLAGG IAAALAEKRG EAAAPLAARS PGETAAPLAD RRDEPAAELA AGGPREAISA APLEHQAPPP PTGPAVVLSG SCSKRTLEQI AYLRQHDRPA FFLDVSATPD AAALADTALA WYDTLPADAA PLIYSSVEPE RLHHIQQRIG VERAAAILED ATGRIAHGLA ARGVRRFIAA GGETSGAVVA ALRVDGGLIG TEAARGVPWI HSPTGDLSLL LKSGNFGEPD LLARASASGG DDVPAR
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