Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6399 |
Symbol | |
ID | 5320702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009622 |
Strand | - |
Start bp | 60977 |
End bp | 61786 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640777979 |
Product | P-type conjugative transfer protein VirB9 |
Protein accession | YP_001314911 |
Protein GI | 150378317 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.474869 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAAAC GCCTCCTGCT TTCCGCGGCC TGCGCGGCCG TGATGATGAC TCACGCCCAT GCTGCGCAGG CACCTCGCCC GGGCAGCCTC GATTCGCGCG TGACCAGCGT CGTCTATCAG TCCAATAACG TGGTGAAGGT CTCTGCCACC TACGGCATCT CCACCATGAT CATCTTTGAC GAGGACGAAA AGTTCGAAAC GATCTCACTT GGCGACACCG ACAGTTGGCA GGTTGCCCCT TCCGACAAGG GCAACATTCT GTTCGTGAAG CCGATCGCAA AGAACGTCGC CACCAACATG AATGTTGTGA CCAGCAAGAG GATCTATTTC CTCGAGCTCA ACGACCATGC TCCGTCCGAT GGCAAGCAGG TGTTCGGGAT CCGTTTCGTC TATCCCGAGA AGGATCTAAA TGCCGCGCTC CGCAAGGAGG CTGAGTACCG GGCGGCCTAC CCGAACATGT CGAATGTCGA TAAGGCCAAC GTCAACATCG ACTATTCGTT TTCCGGAGAT CCGGCGTTGA AGCCTTTGGT GATATTCGAC GACGGGAAAA AGACCTTCTT CAAGTTCGGC AGCCGGGTGC CGGCGATTTT TACCGTCCAG GCCGACTTTT CCGAGACGCT GCGCAATTTC CGCAAGGAGG GCGAATACAT CGTCGTCGAC GGTGTCGCGA CGCAATACAC GCTGCGCGAG GGCAATCAAT GGACCTGCAT CTTTAACCTT CGCAAGCCCG ACTTCGGCGC TCCGAATCCT GCCATTCTCG GTCCGGCTCC TGACACCAAG GCGACGAAAC GTGGGAGGAG CGGCAACTAA
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Protein sequence | MIKRLLLSAA CAAVMMTHAH AAQAPRPGSL DSRVTSVVYQ SNNVVKVSAT YGISTMIIFD EDEKFETISL GDTDSWQVAP SDKGNILFVK PIAKNVATNM NVVTSKRIYF LELNDHAPSD GKQVFGIRFV YPEKDLNAAL RKEAEYRAAY PNMSNVDKAN VNIDYSFSGD PALKPLVIFD DGKKTFFKFG SRVPAIFTVQ ADFSETLRNF RKEGEYIVVD GVATQYTLRE GNQWTCIFNL RKPDFGAPNP AILGPAPDTK ATKRGRSGN
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