| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5860 |
|---|
| Symbol | |
|---|
| ID | 5320162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 822419 |
|---|
| End bp | 823378 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640777555 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001314487 |
|---|
| Protein GI | 150377892 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.235146 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCCG TGCAAACTCG CTCCGAGCGT GCCCTCCACC GGTTGGCGAT CGCCGCCGTG
CTCGTGATCA CGCTGCTGTT CCTTGCGCCC ATCTACTGGA TCACGTCGAC GGCTTTCAAA
CCGCGCAATC TCGCGACAAC AATTCCGCCG ACGGTTATCT TCGAGCCGGA GATCTCGCCA
TTCGTGAAGC TCTTTACCAA GCGCTCTCAG TTGCGTACAG CGCCGGCGCC TGAAGTCTAT
GCCGCCGCTC CCTGGTGGGA ACGACTGGTC TTCGACGGCG GCGAGAAGGT CGTACGCTCG
GGCAGGGGTG AGGTGCAATT ATCCGGCTAT CCCAACCGCT TCATGAATTC GCTTATCGTG
GCGATCACCT CGACAGTGCT TGCCGTCGGC ATGGGTACGT TTACAGCTTA CGGCTTCTCG
CGCTTTAGGG TGAAGGGCGA AGCGGACCTG TTGTTCTTCA TTTTGTCGAC ACGCATGCTG
CCGCCCGTGG TCGTAGCGAT CCCCATGTTC CTTATGTACC GGGCAGTGGG GCTGAACGAC
ACCCACTGGG GCCTTATCAT CCTCTACACC GCCTTCAATC TCTCCTTCTC GGTCTGGCTC
ATGAAGGGCT TCATCGACGA GATTCCGAAG GAGTACGAAG AAGCGGCACT CGTCGATGGC
TATACGCGCT TGGAAGCTTT CTTCAAGATT GTACTGCCAG AGGCCGCCAC AGGAATAGCC
GCGACTGCGG TCTTTTGCTT CATCACGGCA TGGAACGAGT ATGCATTCGC GTTGATCATG
ACGAATCGGC GGGCACAAAC GGCACCGCCC TTCATCCCAA GCCAGGTCGG CAGTGGTCTT
CCGGATTGGA CCGTCATTGC CGCCGGTACC TTCTTGTTCT TGCTACCCGT CGCGATTTTC
ACGTTCCTGC TCAGGAACCA TCTCCTGAGA GGCATGAGTT TTGGAGCGAT CCGCAAATGA
|
|---|
| Protein sequence | MAAVQTRSER ALHRLAIAAV LVITLLFLAP IYWITSTAFK PRNLATTIPP TVIFEPEISP
FVKLFTKRSQ LRTAPAPEVY AAAPWWERLV FDGGEKVVRS GRGEVQLSGY PNRFMNSLIV
AITSTVLAVG MGTFTAYGFS RFRVKGEADL LFFILSTRML PPVVVAIPMF LMYRAVGLND
THWGLIILYT AFNLSFSVWL MKGFIDEIPK EYEEAALVDG YTRLEAFFKI VLPEAATGIA
ATAVFCFITA WNEYAFALIM TNRRAQTAPP FIPSQVGSGL PDWTVIAAGT FLFLLPVAIF
TFLLRNHLLR GMSFGAIRK
|
|---|
| |