| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5387 |
|---|
| Symbol | |
|---|
| ID | 5319689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 352053 |
|---|
| End bp | 353015 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640777157 |
|---|
| Product | autoinducer-binding domain-containing protein |
|---|
| Protein accession | YP_001314089 |
|---|
| Protein GI | 150377494 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.841269 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0379322 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGCCT CCGCATCCGG CGCATCTCCC TGCTCTGCGA AGGCCCCCAA GAAGTGCCCT
TTCCACCTAG TTAGCGAGAG GTTGAATGCT CGGAAAACGT GTGGCAAATT GTGCGCGGTA
AACCTCAGGA AGAACGGCAT GGGTGATCAC CCGGGGCCCG TGGCCCGCTG GCCTACTAGA
CAATCGCGCC ATCAGTGGCG CGCAAACGAT GCGACGAAGG GCCCCTTCGC AACGGCGCAG
GAACAGAAGG AGTATTCAAT GCAAACGGAA CTTCGCCTGT TAATCGACAT GACAGAAGCT
GCAAATGATG AACGAATGAT AAAAAGTGCA GTGCTCAGCT TCGCCAACGC TCATGGTTTT
GAGCGTTTTG CGTATCTGCA AACCCAGGGC GATGATGTTC AGACATTCAA CTCCTACCCA
GAGGAATGGC AGGACATTTA CCTCGGCAGC CGCTACTCGA TCATCGATCC GGTGATCACT
GAAGCCAAGC GTCGCATGAA TGTGTTTTCC TGGACGGTCG ACGATTGGCC GGCTCGTGGA
AGATCGGAGC TTAGGCGTTT CAAAGACCAG GCAGTCGCGC ACGGTATTCG CAGCGGAGTG
ACGGTTCCCG TTGAAGGGAG TTTCGGTTCC AAGATGATGC TGACTTTTGC GTCTTCGGAG
AGGAAGGCTG ACGTTTCGAA ACTCCAGGAC GCGCAAGATG CAATACAGGC TGTCCTTGTG
ATCCATTATC GCCTGAAGAT TTTAGCCGCG GTCACAATTG TCAGTCCGAA AACGATGCTT
TCGCCAAGAG AAGCCATGTG CCTTATGTGG GCGATGAAGG GTAAAAATGG CCCGGAGACG
GCAAAGATCA CCGGGATCAA GCCGCGAACG GTCCAGCACT ATCTCGATAA CGCGCGCCGC
AAGCTCGGAG CGCAATCCGT TCCTCATTTG GTAGCGATTG CCAGAGATCA CGGACTGGTC
TGA
|
|---|
| Protein sequence | MVASASGASP CSAKAPKKCP FHLVSERLNA RKTCGKLCAV NLRKNGMGDH PGPVARWPTR
QSRHQWRAND ATKGPFATAQ EQKEYSMQTE LRLLIDMTEA ANDERMIKSA VLSFANAHGF
ERFAYLQTQG DDVQTFNSYP EEWQDIYLGS RYSIIDPVIT EAKRRMNVFS WTVDDWPARG
RSELRRFKDQ AVAHGIRSGV TVPVEGSFGS KMMLTFASSE RKADVSKLQD AQDAIQAVLV
IHYRLKILAA VTIVSPKTML SPREAMCLMW AMKGKNGPET AKITGIKPRT VQHYLDNARR
KLGAQSVPHL VAIARDHGLV
|
|---|
| |