Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5154 |
Symbol | |
ID | 5319456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 107886 |
End bp | 109877 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640776932 |
Product | hypothetical protein |
Protein accession | YP_001313864 |
Protein GI | 150377269 |
COG category | [R] General function prediction only |
COG ID | [COG0628] Predicted permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGAAGT TCTCGCGTGC CAATGCTCCA GATCGTGCCG CAGCCGCCAG CGGAATGCAG CAGATCGCGC TTGCGCGCGG CACGGCAGCG GCAGCACAGC GGTCACGTCT GCCAACCTTC GTCGCAACCG CAGCCACGGT TGCAGTGCTC TATTTCGCCC GTGATGTGTT TCTGCCTCTG GCGATCGCCA TTTTGCTCAC CTTCGCTCTC GCGCCGCTGG TTTCGAAACT GCGCAGGGTC GGTTGTCCCC GCTCAGTGGC GGTTGTCGGC ACGGTAACAA TCGCCTTTCT GTTCCTGTTC GCATTCAGTG GCGTTGTCGC AATGCAAGTC AGCGAGGTCG CGCAAAATCT GCCGACCTAT CAATACAACA TTGTCGAGAA GGTCAGGAGT TTGAAGGAGA CAGGGTCGGA GAGCCAGATC CTCGACCGCC TTGGTCGCGT GATGGAGAGG ATCAACATAG AAATCAGCCG GCCCGAACCC GAGCTTCGCG CCTCACCCGA AGCCGAACCT GAGAGAAAGC CCGTTCTTGT GGAGATTTTT TCTCCACAGC GACCCGTCGA GACATTGAAG AATATCATTA ACCCGCTGCT TGGCCCCTTG GCAACGACTG GCCTGGTCCT CGTCGTGGTT ATCTTCATGC TCTTCGAGAG GGAGGACTTG CGGGACCGTT TCATTCGGTT GGTCGGCTAC GGCGATCTGC ATCGAACGAC CGAGGCACTT CAGGACGCGG GTGCCCGGGT TGGCCGCTAT CTGCTCATGC AACTGGTCGT GAACATCACC TACGGCATTC CGCTGGCGAT AGGCCTCTCG CTGCTAGGCA TTCCCAATGC CGTTCTCTGG GGGATGCTGG CCATCCTACT GCGCTTCGTC CCCTATATCG GACCGGTGAT CGCCGCGGCG CTGCCATTGT TCCTCGCTTT TGCCGCGGCA CCGGGATGGA GCTTGCTCAT TTGGACGGCT GCCCTTTTCA TCGTTCTCGA ACTTCTCAGC AATAATGTGG TCGAGCCTTG GCTGTATGGT TCACGCACCG GTCTGTCTCC GCTTGCGATC ATCGTCTCGG CGATCTTCTG GGCATGGCTC TGGGGGCCGG TGGGATTGGT GCTGTCGACA CCTCTGACCG TGTGCCTCGT AGTCCTCGGA CGGCACGTCC CACAGTTCGA GTTCCTGGAG ATTCTGCTGG GCAACGAGCC CGTTCTCGAT CCGAAGGAGC GCCTCTACCA GCGCCTGCTC GCCGGTGATC CGGATGAGGC GACGGACAAC GCCGAAGATA TGCTTGAGGA GAAATATCTC GTCGAGTTCT ACGACACCGT TGCGATCCCC GCATTGCTCC TGGCCGAGCG GGACCGCGCA CGGGGCGCCT TGACGAGCGC CCAGGCAGCT CAGATTGCCC AGAGTGCGAA CACACTTATT GCCAATCTCG AGGAGATTGC CGGCGAAGAG GAGGGGGAGG AGGAAACGAG CACGGAAGAT CAGGAAAGTG ACGGGGACGG GGACATGGAT GAATATGATC TTCCCACGGG AGACGGGAAA TCTGTCCTTT GCGTCGGGGG GCGTGGTGAC CTCGACGATG TTGCCGCTTC AATGCTCGCC CAGACCCTTT GGATCCAGGG CGCGGATGCT GCGCAGGCCG GCCACGAAGT TCTCAAGGCG GGCAATATAA AAGGTCTGAA GCTTGAAGGG CGCAACGCAG TCGTCCTAAG CGTTCTCGAT CAGGATTTTA TGCGGCATGC CAAATTTACC GTGCGCCGGC TGAAACGTAT GGCGCCTGCG GCGCGTATCG GGATCGTCCT GTGGCAGGAG AACGGCCGGC CAGGAGCAAC CGAGCGAGAC CAACTTATTG AATCGATGCA GGCGGATTTC GTCGTATTCG GGATGGGGGA CGCCGTCCGC GAGGCGCTCT CCGACGCCGC TCCTCGTCCG TTGAAACTCG CCCATCCAAA GATCGCACCT GGATACGCCA TGCGGCGAAG CAAGCGCGTC GAGAGATCAT AA
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Protein sequence | MLKFSRANAP DRAAAASGMQ QIALARGTAA AAQRSRLPTF VATAATVAVL YFARDVFLPL AIAILLTFAL APLVSKLRRV GCPRSVAVVG TVTIAFLFLF AFSGVVAMQV SEVAQNLPTY QYNIVEKVRS LKETGSESQI LDRLGRVMER INIEISRPEP ELRASPEAEP ERKPVLVEIF SPQRPVETLK NIINPLLGPL ATTGLVLVVV IFMLFEREDL RDRFIRLVGY GDLHRTTEAL QDAGARVGRY LLMQLVVNIT YGIPLAIGLS LLGIPNAVLW GMLAILLRFV PYIGPVIAAA LPLFLAFAAA PGWSLLIWTA ALFIVLELLS NNVVEPWLYG SRTGLSPLAI IVSAIFWAWL WGPVGLVLST PLTVCLVVLG RHVPQFEFLE ILLGNEPVLD PKERLYQRLL AGDPDEATDN AEDMLEEKYL VEFYDTVAIP ALLLAERDRA RGALTSAQAA QIAQSANTLI ANLEEIAGEE EGEEETSTED QESDGDGDMD EYDLPTGDGK SVLCVGGRGD LDDVAASMLA QTLWIQGADA AQAGHEVLKA GNIKGLKLEG RNAVVLSVLD QDFMRHAKFT VRRLKRMAPA ARIGIVLWQE NGRPGATERD QLIESMQADF VVFGMGDAVR EALSDAAPRP LKLAHPKIAP GYAMRRSKRV ERS
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