| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5120 |
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| Symbol | |
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| ID | 5319422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 74061 |
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| End bp | 75026 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640776898 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001313830 |
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| Protein GI | 150377235 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.229641 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.108359 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATTG GCATCCATAT CCCCGATGCG GAACAATTGG CGGCGATAAT GGCCGGCTTT
TCCGCATTTT CGGCAGTCGT CGTCATTTCC TGGCCTTACG TTTTTCGGGA CACTCTGTCG
GAGCGCATGC GGAAGGTGGA GGGCGAGCGC GAGCGTATCC GCCGTCGCGA ACGCGCCCGG
CTGGAGCAAA AGAGCAAGAC GTCCCTGCGC GTAGAGCCGA AGCGCCTCTT TCAGGCGATC
GTCGACCGCT TCCGTCTTGC CAAGCAGGCG GATGACGGCG AGATCGTCCG CAAGCTGAGC
ATGGCGGGCT ATCGTGGCCA CGCCGCCGTG ACGGCATTTC TCGCTTTCCG GCTGATAGCG
CCGGTCGTCA TCTTCATGGC CTGCTTGCTT TACATCCTGT TGGCGGTACG ACCGGAGGCA
CCGCTGCTTC TGGTGGTGGC GATGGCTATC GCCACGGGCG CGCTTGGATA TTTTGCCCCG
GCGATCTTCG TCAGCAACAG GATCACCAAA CGGCAGCAGT CGATCCGGCG TTCCTGGCCC
GAGGCACTGG ACCTTCTGCT GATCACCGTC GAATCCGGAA TGGGGATCGA AAGCGCTTTC
CGGAAGGTTG GCGAGGAGAT CGGCACGCAA TCGCCGGAGA CTGCCGAGGA GATCCTGCTG
ACGACCGCGG AGCTTTCCTA CCTGCAGGAT CGGCGACAGG CCTTCGAGAA CCTGGGGCAG
AGAACGGGCG TGGAGGGCGT GCGCGCCGTC GTCACGAGCC TCATCCAGGC GGAGAAATAC
GGCACGCCGC TCGGCCAGGC ATTGCGCGTG ATGGCGCAGG AGAACCGCGA CATGCGCATG
AGCGAGGCCG AGAAAAAGGC CGCCGCCCTT CCGCCCAAGC TCACCGTCCC GATGATCCTG
TTCTTCCTGC CCGTCCTCTT TGCGGTCATC ATTACGCCGG CGGTCATTCA GATCATGAAT
ATGTAG
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| Protein sequence | MNIGIHIPDA EQLAAIMAGF SAFSAVVVIS WPYVFRDTLS ERMRKVEGER ERIRRRERAR
LEQKSKTSLR VEPKRLFQAI VDRFRLAKQA DDGEIVRKLS MAGYRGHAAV TAFLAFRLIA
PVVIFMACLL YILLAVRPEA PLLLVVAMAI ATGALGYFAP AIFVSNRITK RQQSIRRSWP
EALDLLLITV ESGMGIESAF RKVGEEIGTQ SPETAEEILL TTAELSYLQD RRQAFENLGQ
RTGVEGVRAV VTSLIQAEKY GTPLGQALRV MAQENRDMRM SEAEKKAAAL PPKLTVPMIL
FFLPVLFAVI ITPAVIQIMN M
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