| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5114 |
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| Symbol | |
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| ID | 5319416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 66185 |
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| End bp | 66877 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640776892 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001313824 |
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| Protein GI | 150377229 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00554548 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATGCCT CAGGCGTCGC ACTTATTGCT GATGACGATG AATTCTTCAG GATCGCGCTT
GGCTTCATTT TGAAGAGCAA GTTGCATTTC AACGAGATCA TCGAGACCGG CACACTCGAT
GAAGCGATCG AAAGACTTTC CGAACGCGAA GACGTTTCGC TGGCATTGTT CGATTTGGCG
ATGCCGGGTA TGCAAAGTGT TGCGAGCCTT GCTGCCGTGC GCGACGTCCG TCCGGATTTG
AAGGTTGCCG TCGTTTCGGC ATCATCTCGC AGATCGGACA TCCTGTCGGC GCTTACGGAG
GGCATAAACG GTTATGTCCC CAAAGGGCTC GGAGCCACCG ATCTCGCCGA GGCGGTTCGC
GCTATTCTCC ACGGCTCCGT CTATGTCCCT CCCTCCATGG CAGGCCGCGT GTCGCCGGCC
GAAGAAGCCA AGCCTCCCGC GCGCGTTGGG GAAGCCCCGC AAGGAAGCCA CCGTACAATC
GAGTTCCTCA CGCCGAGGCA GCGCGAGGTC TTGCAACTCC TTGTGCAGGG GCTCTCCAAC
AAGGAAATCG CCCGCAAGCT GAAACTTGGC GAGGGCACAG TGAAAATCCA TATGGCGGCC
CTTTTTCGCA GCCTGCGGGT CAGGAACCGC CAGGAAGCGG CGGCCGCCGG GGCGCGCCTC
CTGCCTATGA CGGAAAGTAG ACCGCATGGA TAG
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| Protein sequence | MNASGVALIA DDDEFFRIAL GFILKSKLHF NEIIETGTLD EAIERLSERE DVSLALFDLA
MPGMQSVASL AAVRDVRPDL KVAVVSASSR RSDILSALTE GINGYVPKGL GATDLAEAVR
AILHGSVYVP PSMAGRVSPA EEAKPPARVG EAPQGSHRTI EFLTPRQREV LQLLVQGLSN
KEIARKLKLG EGTVKIHMAA LFRSLRVRNR QEAAAAGARL LPMTESRPHG
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