Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5048 |
Symbol | |
ID | 5317922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 1568391 |
End bp | 1569914 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640776828 |
Product | integrase catalytic region |
Protein accession | YP_001313760 |
Protein GI | 150377164 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGAAGG TAAGCATGGC GACACGTGCG GAATTGGTTG CGGCGATCAG TTGTCGCTAT GTATTAGGTG GGCGGGCCGA GAAGGCGAGG ATGTTAGACG AGTTCGTGGC GCTCACGGGC TTTCACCGCA AGCATGCGAT GCGACTGCTG CGAGGAGACC GCGAACCGGC GAAGGGTGGT CCTCGGCCAG GGCGCCGGGT TTACGGCGAT GACGTGCGGG CAGCGCTCGT CGGTGTTTGG GAGGCGTCGG ATCGAATTTG CGGCAAGCGA CTACACCCCC TGTTGCCAAC ACTGATCGAA GCGATGGAAC GTCATGGACA CGGCGATATG AATTGCGAGA CGCGCCGGCA ACTCTTGGCG ATGAGCCCAG CGACGATTGA TCGGGTCCTC AAGGAGATCA AAGCGAGCGC CACGGGTCCG CGGCGCCGGA AAGGGTCAAC AGCGATACGG CGTAGTGTTC CCGTTCGAAC CTTCTCGGAT TGGGATGACC CCGCACCCGG CTTTGTCGAG GCTGATCTCG TTTCTCATTC CGGCCCGTAC GCGAGGGGTG CCTTCTCTCA AACGCTGGTG TTGACCGATA TAGCCACGGG CTGGACGGAA TGCGCGCCGC TGCTGGTTCG CGAGCAAACG GTACTGATCA CTGCGTTGGC CGAACTGCGC AAGTTGCTGC CGTTCCCGCT GCTGGGCTTC GACACCGACA ACGACAGTGT ATTCATGAAC GAGAGTGTTC ATGAGTATTG CTTGCGCGAT AATATCGAGC TCACCCGTTG CCGCCCCTAC CGAAAGAATG ATCAGGCATT TGTCGAGCAG AAGAATGGCG CGATCGTGCG CAAGATCGTT GGATACCGAC GCTTCGAGGG GCTGCGAGCC ACTCGGGAAC TGGCCAAGCT TTATTCGTCA ATGCGGTTGT TCGTGAATTT CTTTCAGCCA TCATTCAAGC TGAAAGAAAA GCACCGTGAC GGAGCCAAGG TGGTCAAGCG CTATCATCGT CCCGCCACGC CCTATCAGCG GCTGCTTGAC GACCCACGCA CGCCGGAGGA TACATGCCTT CGGCTCAAGG CGATGTACCT GACACTCGAT CCGGTCCGGC TGCTCCGCGA CATACGCCTG GCACAAACGA GATTGGTCGA AATTGCTGAC AAGCCTGATG GTTCGCCTGC CACCGACGGC GAGGCATTAC CGCTCGAAGA CTTTCTGTCT GGCTTACGGA TTGCTTGGCG TGGTGGTGAA GTGAAACCGA CTGCCCGCTC CAAGCCAGCG GCCAAGCGAG AGCGGCGGAG GCCCGATCCT CTACTCGCCG TCACTGCCGA ACTCGAGGAA TGGTTCGAGG CGGAGCCTTG GCGAACTTCG CGAGAGTTGC TTGAACGCTT GCAGGTCAAA TACCCCGGCG TGTATCCCGA CCGCCTCATT CGGACCGTGC AGCGTCGAAT GAAGATCTGG CGCAGTACAC AGGCCAATGC GCTGGTGTTC GGGCCATTCG CCGATGTCGC GCGGCAGACG CAAATCGTAG AGGTCGTGCA GTGA
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Protein sequence | MRKVSMATRA ELVAAISCRY VLGGRAEKAR MLDEFVALTG FHRKHAMRLL RGDREPAKGG PRPGRRVYGD DVRAALVGVW EASDRICGKR LHPLLPTLIE AMERHGHGDM NCETRRQLLA MSPATIDRVL KEIKASATGP RRRKGSTAIR RSVPVRTFSD WDDPAPGFVE ADLVSHSGPY ARGAFSQTLV LTDIATGWTE CAPLLVREQT VLITALAELR KLLPFPLLGF DTDNDSVFMN ESVHEYCLRD NIELTRCRPY RKNDQAFVEQ KNGAIVRKIV GYRRFEGLRA TRELAKLYSS MRLFVNFFQP SFKLKEKHRD GAKVVKRYHR PATPYQRLLD DPRTPEDTCL RLKAMYLTLD PVRLLRDIRL AQTRLVEIAD KPDGSPATDG EALPLEDFLS GLRIAWRGGE VKPTARSKPA AKRERRRPDP LLAVTAELEE WFEAEPWRTS RELLERLQVK YPGVYPDRLI RTVQRRMKIW RSTQANALVF GPFADVARQT QIVEVVQ
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