Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4984 |
Symbol | |
ID | 5318797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 1497900 |
End bp | 1498730 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640776766 |
Product | extracellular solute-binding protein |
Protein accession | YP_001313698 |
Protein GI | 150377102 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.446227 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0182902 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGC ATATCGCAGC GCTCACCGTC GCATGCCTCG CCGCAACCTC TGCCAGTGCA GCCGGCTTGC CGGAGCGGAT CAAGACGGCC GGGAAGGTCG TCGCCGCCAA CCAGCCGAAC TACCCGCCGA TGGAATATGT CGACCCGGCC ACAAACGAAC TGAAGGGCGT CGACATCGAT CTCGGTCTGG CGCTCGCCAA AGAACTCGGC ACCACCGTCG AATGGACGAA TATCGGCTTC GAGCAGATGA TCTCGTCGCT GACGACCGGT CGCGTCGACC TGATTCATAG CGGCATGAGC GACCTGCCGA AGCGCCGCGA GACGCTCGAT TTCGTCGATT ACATGAAGTC CGGCGCGCAG TTCTATACGT CCTTCGGCCG CAAGGACGAG TTCAAGACGC TCACCGATTT CTGCGGCAAG ACCGTCGGCA TGAGCCGCCG CACCTCCTTC CCGGACGAGA CGGCGAAGTG GAGCGCTGCC AATTGCGAAG CCAAGGGGCT GGGCGCGATC AAGGTCGTCG GCACGGAAGG CTCCGCCGAC GCCCGTGCTC AGTTGAAGCA GGGCCGGCTC GATGCCGCGG TCCAGGGTTC AGAAACGCTG CCCTACCTCA TGGACCTCGA AAAGGACACC TATGCCGTCG TCGGCGAGCC CTTCACGACG GTGTACCAGG GCATAGGCTT TGCCAAAAAG GACGCGGAAC TGCGCGATGC CTATGCCGCA GCGCTGAAGG CGCTGATGCA ATCAGGGGAA TACAAGGCGA TCTTCGCCAA ATACGGCCTC GAAGGCACCT TGCTCGATGG CATTTACATC AACGGTGAAC CGGCGCAGTA G
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Protein sequence | MNKHIAALTV ACLAATSASA AGLPERIKTA GKVVAANQPN YPPMEYVDPA TNELKGVDID LGLALAKELG TTVEWTNIGF EQMISSLTTG RVDLIHSGMS DLPKRRETLD FVDYMKSGAQ FYTSFGRKDE FKTLTDFCGK TVGMSRRTSF PDETAKWSAA NCEAKGLGAI KVVGTEGSAD ARAQLKQGRL DAAVQGSETL PYLMDLEKDT YAVVGEPFTT VYQGIGFAKK DAELRDAYAA ALKALMQSGE YKAIFAKYGL EGTLLDGIYI NGEPAQ
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