| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4712 |
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| Symbol | |
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| ID | 5318862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1231207 |
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| End bp | 1232628 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640776510 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001313442 |
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| Protein GI | 150376846 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.531002 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0413693 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACGG AAACGATCCT GCCGGCTCGC CTCGATCTGC AGCCGCCCGC GGAGACGGAA
AGCACGGAAC GTCGCCTGCC GGTAGCCGCG CAGGGGCGGC TGCCAATGAC AATGCCGGAG
CCGGACCTCC TGGAGAACGA AACGCGGTCG CCCATCCGGC GCCTCGTCAT CGCCGGGCTG
ACGACGATCC TCGTTGCCTT CGGTGGCTTC TTCGGCTGGG CATTTTCAAC GGAGCTCAGC
AGTGCCTCGG TCACGAGTGG CACTATCATC GTCGATTCGA AACGCAAGAC GGTTAGTCAT
TTCGAGGGAG GCGTGCTCAG CCGTATCCTC GTGCAAGAGG GAGATCATGT GGCTCCCGGC
CAACCGCTGA TGCAACTGGA GGATACGCGT GCGCGCTCCG ACCTGCAGGC GCTGGAGAGC
CGCCGTGTCG GTCTGATCGC AAAGCTTGCG CGGCTTCGGT CCGAGCGGTC GGGCTTGCAG
GCGGTCGACT TCCCGGACGA CCTCGTCGCT GCGGGGGAAG CCGCCGCGGA TGCAGTCACG
GCGGAAACCG CGTTCTTCGA GAAGCGCAAC GAGGCCAAGG AGGGCCGGAT AGCGATCCAG
CGGAAGACGA TCGAGGAATA TTCGGAGAAA GCGAAGTCTC TCACAGCTCA GTTGCAGGCG
ACAGACCGGC AGATTGAACT GATGAACGAG CAGCGAACGG CGATCGCGAC CCTGGTCGAA
AAGGCGTTCG CCCAGCGATC GAAACTCATC GAGATCGACG CGCGGCTCAG CGAACTCGCC
GCGACGCGGG GCGAAATTGC GGGCGACAGG GCGCAGGCGG AAAAGGCGAT GGCAGGCGCG
GAGCTCACGC TCACCGGAAT CGAATCGGAT TTCCAGTCGG AGATTGCCGG AGAGATTACA
ACGGCGCGCC TCGAGCTTGC GGAAGTCGAG GAGCGCATCA TCTCCGCCAA GGACGTGCTG
CGCCGCCTCG AAATCCGTGC GCCCCAGGCG GGCATCGTCG CCAACATTCA GCTGCGCACG
CCCGGCAGTG CCGTCACGCC CGGCCAGCCG CTTCTCGACA TCGTGCCCGA GGACGAGCCG
CTGCTCGTCG AGATGCATGT CAGCACGCGG GACATCGACA GCATAACGAT CGGCTCGAGC
ACGCAAATCC GCCTCACCGC CTATAACCAG CGTTCGCACC TGCCCATGGA CGGCAAGGTC
ACCTATATCG CCGCGGACCA ATCCATGGAT GAAAAGTCCA ATGTCGCCTA TTTCGTCGCA
CGGGCGGAAA TCGCGCCGGA ATCGCTTGCC GCAAATCCTG ACATTCGGCT TTATCCGGGC
ATGCCCGCGG AAGTGCTGAT CGTGCACAAA GCCCGCTCGG CAATCGATTA CCTCGTCTCT
CCCGTCTCGG ACAGTTTCAA CCGCGCCTTC CGGGAGGATT GA
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| Protein sequence | MKTETILPAR LDLQPPAETE STERRLPVAA QGRLPMTMPE PDLLENETRS PIRRLVIAGL
TTILVAFGGF FGWAFSTELS SASVTSGTII VDSKRKTVSH FEGGVLSRIL VQEGDHVAPG
QPLMQLEDTR ARSDLQALES RRVGLIAKLA RLRSERSGLQ AVDFPDDLVA AGEAAADAVT
AETAFFEKRN EAKEGRIAIQ RKTIEEYSEK AKSLTAQLQA TDRQIELMNE QRTAIATLVE
KAFAQRSKLI EIDARLSELA ATRGEIAGDR AQAEKAMAGA ELTLTGIESD FQSEIAGEIT
TARLELAEVE ERIISAKDVL RRLEIRAPQA GIVANIQLRT PGSAVTPGQP LLDIVPEDEP
LLVEMHVSTR DIDSITIGSS TQIRLTAYNQ RSHLPMDGKV TYIAADQSMD EKSNVAYFVA
RAEIAPESLA ANPDIRLYPG MPAEVLIVHK ARSAIDYLVS PVSDSFNRAF RED
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