| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4453 |
|---|
| Symbol | |
|---|
| ID | 5318605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 937679 |
|---|
| End bp | 938869 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776255 |
|---|
| Product | carboxymuconolactone decarboxylase |
|---|
| Protein accession | YP_001313188 |
|---|
| Protein GI | 150376592 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0765828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACA TTGCCGCAAG CATTGCTATC TCGGCTCTCG CCGCCACCGC TGTGGAGGCG
CAGGAAGAGC GGCGAAAGAT CGCTCCACCG GCCGTCTATG ACGTCGCGCC GGGTCTCGGC
CACTTCACCG ACGATGTTCT GTTCGGCGAA GTCTGGGAAC GAACAGAGCT CCCGTCTCGC
GACCGGAGCC TCGTAACCCT TTCGGCGATC GTCTCGACGG GCAAGACGGC GCAGATTGGC
GCCCATGTGA GCCGGGCCCT GGACAACGGT GTGAAGCCTG GAGAGATCGG CGAACTCATC
ACTCATCTTG CATTCTACTC CGGTTGGCCA AACGCGATCT CCGCCGTGAC GGAGACGAAG
AAGGTTTTCG ATGAGCGCCA GATTGCACCC GTCAAGAACA GCGAGGCGGC GCGCATAGAA
TTGGAAGCCG CAGCCGAGGC GGCTCGGAGC GAGACGGTCA GCACCACGGT TGCACCAACG
GCGGCAGCAC TGGCCGACCT TACCAACCGC GTGCTCTTCG GCGATCTGTG GCAGCGCCCG
GATCTGTCGG CGCGCGACCG TAGCTTGGTG ACGATCGCCG CTCTGATCGC GGTTGGTCAG
CCGGAACAAC TGCCGTTTCA TGCCAACCGC GCGATGGACA GCGGCTTGAC GCCGTCAGAA
GCTTCAGAAG TACTGGCGCA TGTCGCTTTC TACGCCGGTT GGCCGAGAGC CATGTCCGCC
GTGCCCGTTC TCAAGCAGGT TCTCAATAAC AGGCAAGGAA CTCAGGTGAG CGCTTCCCAG
GCAGATCTGA AGATTACTCC AGCCGGAATT GGTTCTGCGT CAGCTCCGGA GGAGTACTTC
ACAGGTACCG TCCAGATCTC GGGCCGTTAT CAAGCCGACG CTCCCGCGCG CATTGGCGGG
GCAACCGTCT CCTTCTCCGC CGGCGCTCGC ACGGCCTGGC ACACACATCC TCTCGGCCAG
ACCTTGTTCA TCGTGAGCGG GCGCGGCCTG GTTCAGAAGG AAGGTGAGGC AGTTCAGGAA
GTAGGTTCGG GAGACGTGGT ATGGATCCCA CCGCTGATCC GGCACTGGCA TGGCGCCTCC
AGCACCGGGC CGATGACGCA TTTCGCAGTG GCCGAGGCGC TCGATGGAAG CTCAGTCACG
TGGATGGAAA AGGTGTCCGA CGAGGACTAC GGCAAGGGTG TTCGAGAGTA G
|
|---|
| Protein sequence | MKYIAASIAI SALAATAVEA QEERRKIAPP AVYDVAPGLG HFTDDVLFGE VWERTELPSR
DRSLVTLSAI VSTGKTAQIG AHVSRALDNG VKPGEIGELI THLAFYSGWP NAISAVTETK
KVFDERQIAP VKNSEAARIE LEAAAEAARS ETVSTTVAPT AAALADLTNR VLFGDLWQRP
DLSARDRSLV TIAALIAVGQ PEQLPFHANR AMDSGLTPSE ASEVLAHVAF YAGWPRAMSA
VPVLKQVLNN RQGTQVSASQ ADLKITPAGI GSASAPEEYF TGTVQISGRY QADAPARIGG
ATVSFSAGAR TAWHTHPLGQ TLFIVSGRGL VQKEGEAVQE VGSGDVVWIP PLIRHWHGAS
STGPMTHFAV AEALDGSSVT WMEKVSDEDY GKGVRE
|
|---|
| |