| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4027 |
|---|
| Symbol | |
|---|
| ID | 5318327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 486072 |
|---|
| End bp | 487019 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640775835 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001312768 |
|---|
| Protein GI | 150376172 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.640342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.816795 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGA CAGCCATGAC GACTTCTGCC GATACCCCCG AGACGAAAGT CTCTCGTTTT
CAGGTGCTGC GCCTCATCAG CCGGGACTGG CTGGCGCTCG CCGCGGTGAT CTTCCTGCTG
ATCGTGGTCG GATGTGCCGT TTTCGGTCCA TGGCTTGTGG GCGATCTTAT CGACAAGCCC
AATTTCCGTG CACGAAACAT GGCGCCGTTC GACCTGTCCC AGGGCTGGAC CTATGTTCTC
GGTGCCGATA CGCTCGGCCG CAGCCTGCTC GCTCGGCTTG TGGTCGGCGC GCAAAACACC
ATCGGCATCG CGTTCTGCGC CGTGCTTTTT TCGGTCGTGA TCGGCGGTAT GCTCGGTTTG
ATTGCCGGCT ATTCGCGAGG CGCCGCCGGC ACGATGATCA TGCGCGGTGC GGATATCGTG
ATGAGCTTTC CGTCGCTCCT GCTCGCCCTC ATCGTTCTTT TCAGCCTGGG GCCTTCCGTC
ACCAATCTCG TCCTCGTCCT GGCGATCACC CGCGTGCCGA TTTATCTGCG CACGACTCGT
GCGGAAGTGC TCGAGGTGAG AGAGCGTATG TTCGTGAGCG CCGCCGTTGC GCTTGGCGCC
AATCATAGGC GCATCCTTTT CCGCCATATC GCCCCGATGG TGCTGCCCAC CCTTGTGACG
ATCGGCGCGA TCGACTTCGC GACCGTCGTT CTTGCCGAGT CATCGCTGAG CTTCCTCGGC
CTCGGCATCC AGGCGCCTGA ATTCACCTGG GGCGCCATGG TCGCCACCGG CCGTGGCTAT
CTCTCGACCG CCTGGTGGAT TGCATTCTGG CCGGGTCTTG CGATCCTGCT GACGACGCTT
TCGCTCAATA TTCTCTCGAG CTGGTGGCGC ACCTATGCCG ATCCGCAGCA GCGCTGGCGG
ATCGAACTCG CTCGCTCGAA GAAGGGCATT CCGGAGAAAC GCAAATGA
|
|---|
| Protein sequence | MSATAMTTSA DTPETKVSRF QVLRLISRDW LALAAVIFLL IVVGCAVFGP WLVGDLIDKP
NFRARNMAPF DLSQGWTYVL GADTLGRSLL ARLVVGAQNT IGIAFCAVLF SVVIGGMLGL
IAGYSRGAAG TMIMRGADIV MSFPSLLLAL IVLFSLGPSV TNLVLVLAIT RVPIYLRTTR
AEVLEVRERM FVSAAVALGA NHRRILFRHI APMVLPTLVT IGAIDFATVV LAESSLSFLG
LGIQAPEFTW GAMVATGRGY LSTAWWIAFW PGLAILLTTL SLNILSSWWR TYADPQQRWR
IELARSKKGI PEKRK
|
|---|
| |