Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3880 |
Symbol | |
ID | 5318560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 336267 |
End bp | 337646 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640775692 |
Product | hypothetical protein |
Protein accession | YP_001312625 |
Protein GI | 150376029 |
COG category | [C] Energy production and conversion |
COG ID | [COG1035] Coenzyme F420-reducing hydrogenase, beta subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.712619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGAAAT CGGGCCTTTG CATCGGCTGC GGCACGTGCA TGGCGGAGTC GGGCGACGGC GCTGCGATGC ATCTGGACCG GTACGGCCAG CTCAAGCCGG ACAGATCAAA TAATCCGGCA GGATTTGCCG AATTGTGCCC CTTTTCGCCC CACGCCCGAA GCGAAGATCA AATCGCTCTG GCTCGTTTCG GATCGGCGCG ATTTTACGAT TCCCGGATCG GGCGCTTCGA GGCTGCCTAT GTCGGGCATG TCCTCGAGGG CAGCTTCCGA GTGGACGGCA GTTCAGGCGG CATGGCCAGT TGGACGGCCG CGGAGCTTTT GAGAAGAAAG CTTGTCGACG CCGTTGCGCA TGTCGTTCCG CGCGAGGGAG ACGGTGAACG TCTGTTCCGA TATCAGCTCT CGCGGACCGC GGAAGACCTG CGCAAGGGCG CCAAGTCGCG CTACCATCCG GTGGAGCTAT CCGGAGTCGT CGCCGAGATG AAGCGCCACC CGGGCCGCTA TGCGGTCGTC GGCATCCCCT GCTTCATCAA GGCGCTCCAT CTCCTGAGCC TTCAGGACCC GGCGCTCAGG GAGCGACTTG CTTTCACGCT CGGTCTCTTC TGCGGGCACA TGAAAAGCAC GCGCTTCGTG GAGAGTTTCG CCTGGCAGAT GGGCACGGAC ATGAACGCCG TCGCGGGCGT CGACTACCGG CTGAAGGACC CCCGGAGACC GGCCAACTGG TACACCGCCC ATCTGCGGCT CAAGGATGGA AGCACCAGAA GCAAGGACTG GTGGCATCTG GTCGACGGCG ACTGGGGAGC CGGGTTCTTC CAGAATTCCG CATGCAATTT CTGCGACGAC GTGGTTGCCG AAACTGCCGA TATTTCCTTC GGCGACGCCT GGGTAGAACC TTATTCCTCC GATGGACTCG GAACGAATGT CGTCATCGTT CGCTCACCGC TCCTGCAGGC GCTCGTTGCC GATGCGGTCA AAGAGGGAAG GCTCGAGCTT CGCGAGGTCG ACAGCGACTT CATCGTCGAG ACGCAGGCAG CCGGCTTCCG GCAACGCCGC GAGGGGCTTG CCTTCCGGCT TGCCTGGCCG CGTTCCGGCG TACAGCCTAG AAAGCGCGTT GCGCCGGCGT GGAAGGGTTT GCCCGCACAG CGGATGCTTG TCTACGGATT GCGCAGCGCG ATCAGCGCTG CCAGCCACCG CGTCTTCTGG TTCGCCAGGA CCATGAAAAT ACCTGCCGCC TATATTCACT GGGCATCGGC GATGCTCGCG CTCTACCAGG GTGTGACCTA TTCACGCGGC TGGATCGGCA AGCTCGTCGA TGGCGTCTCG ATGCGCGGGC GCAAGCGTTC GAAGGACGAG GGTTCGAAGG ACGAGGGGGC GGGCGCATAG
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Protein sequence | MVKSGLCIGC GTCMAESGDG AAMHLDRYGQ LKPDRSNNPA GFAELCPFSP HARSEDQIAL ARFGSARFYD SRIGRFEAAY VGHVLEGSFR VDGSSGGMAS WTAAELLRRK LVDAVAHVVP REGDGERLFR YQLSRTAEDL RKGAKSRYHP VELSGVVAEM KRHPGRYAVV GIPCFIKALH LLSLQDPALR ERLAFTLGLF CGHMKSTRFV ESFAWQMGTD MNAVAGVDYR LKDPRRPANW YTAHLRLKDG STRSKDWWHL VDGDWGAGFF QNSACNFCDD VVAETADISF GDAWVEPYSS DGLGTNVVIV RSPLLQALVA DAVKEGRLEL REVDSDFIVE TQAAGFRQRR EGLAFRLAWP RSGVQPRKRV APAWKGLPAQ RMLVYGLRSA ISAASHRVFW FARTMKIPAA YIHWASAMLA LYQGVTYSRG WIGKLVDGVS MRGRKRSKDE GSKDEGAGA
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