Gene Smed_3782 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3782 
Symbol 
ID5317950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp228829 
End bp230046 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content64% 
IMG OID640775595 
Productmajor facilitator transporter 
Protein accessionYP_001312528 
Protein GI150375932 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.22509 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAATC CTTACGGAGA AATATTTAGG GCGCCGGGGG CCAAGGGCTT CTCGGCAGCC 
GGCTTCTTCG CGCGACTTCC GATAGCGATG GCCCCGATCG GCATCGTCGC AATGGTGTCT
CAGACCCACG GCGAATACTG GCTGGCGGGC GCGGTCTCCG CGACCTTCGC CCTCACCAAC
GCGCTCGTCG CCCCGCAGAT ATCGCGTCTG GTCGACCGCG TCGGCCAGAC GGCCGTTGTC
GTTCCGACGA CGATCGTCTC GGTCGCAGCC TTCCTGGCGC TGATCATTGC GGCCAACCGC
GACTGGGCGG CGTGGACGCT GTTCGTTTTG GCTTTCCTCG CCGCCGCGAT GCCGAGCATG
CCCGCGCTCG TTCGCGCCCG CTGGACGGAA ATATTCCGCA ATCGGCCCGA GCTGAACACC
GCCTTCGCAT TCGAGTCTTC GGCAGACGAG CTTGTCTACA TTTCCGGGGC TTCGCTGTCG
GTTGGCCTGG CGGTTGCGCT GTTCCCCGAA GCCGGCATGC TGACAAGCAC TATCTTTCTC
GCCCTTGGGA CGGCCGCATT CATTCTGCAG CGTTCGACCG AGCCGAAGGT GCATCCCATC
GAGGCCAGCG CCTCGCAAGC GTCGGCGATC CGTCAAAGAC CGGTACAGAT CATCACCCTT
GCGCTTATCT TCGTCGGCTC GATCTTCGCG ACAGCGGAGG TCAGTGTCGT GGCGATCACG
AAAGAGCTCG GGCAGCCGCA GGCAGCCAGC CTGGTCATCG GCGTCTACGC CGTCGGCTCG
TTCCTGGTGG GGCTGGCACT TGGCGCGCTG AACCCGACCA TGCCGCTGCA GAGGCAGCTT
CTGATCGCCG TCAGTGTAAT CGCCATCACG TCCCTCCCTC TCCTCGTGGC CGATACGGTT
CCGTTCCTTG CATTTGCTGT CTTTGTCAGC GGCATAGCCA TCTCACCGAC CTTCATCACA
GCTTTCGGTT TGATTGAGCG CCGTGTACCG GAATCGATGC TGACGGAAGG CGTCACCTGG
GTCATGACGG GAATTGGTAT AGGCATGGCG CTCGGCGCAT TCGTGTCAGG CTGGGTTGTC
GACAATTACG GCGCGCAGAA GGGTTTCTGG GTATCCGTGG CGGCCGGGGC GGCGACCGTC
GTCACGGTGG CGGCGGGTCA GCGCAGCCTT GCCGGCAGCA AAGCGATGCC GGCAGCGGTT
CCGCTTCCCG CCGAGTAG
 
Protein sequence
MSNPYGEIFR APGAKGFSAA GFFARLPIAM APIGIVAMVS QTHGEYWLAG AVSATFALTN 
ALVAPQISRL VDRVGQTAVV VPTTIVSVAA FLALIIAANR DWAAWTLFVL AFLAAAMPSM
PALVRARWTE IFRNRPELNT AFAFESSADE LVYISGASLS VGLAVALFPE AGMLTSTIFL
ALGTAAFILQ RSTEPKVHPI EASASQASAI RQRPVQIITL ALIFVGSIFA TAEVSVVAIT
KELGQPQAAS LVIGVYAVGS FLVGLALGAL NPTMPLQRQL LIAVSVIAIT SLPLLVADTV
PFLAFAVFVS GIAISPTFIT AFGLIERRVP ESMLTEGVTW VMTGIGIGMA LGAFVSGWVV
DNYGAQKGFW VSVAAGAATV VTVAAGQRSL AGSKAMPAAV PLPAE