Gene Smed_3772 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3772 
Symbol 
ID5318220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand+ 
Start bp217969 
End bp218574 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content59% 
IMG OID640775585 
ProductTetR family transcriptional regulator 
Protein accessionYP_001312518 
Protein GI150375922 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.392718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.705056 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATC TAACCGACAG CATCGATGCA ACCAGACAGG AAAACGTCAC GCGGATTCTC 
GACGCCGCCG AGCGACTGTT CCGCCATTAC GGCTATGCCA AAACAAACGT CGCTGACATC 
GCGCGCGAGC TCGATATGTC GCCGGCGAAC ATCTACCGCT TCTTCGCGTC GAAAACGGAA 
ATCCATCAGG CGCTCTGCTC GCGCATGCTC GGTGCAAGCT ATCAGCAGGC CCATGACATC 
GCGTACCTGC CTCTCAGCGC TTCAGAGCGG CTGAGGCGTT ATGCGCAGGG TCAGCACAAG 
CTCACCGTCG AAACGATGCT CGACGAAAAG AAAGTGCATG AGATGGTCGT CGTCGCGATC 
GAACACAACT GGCACGTCAT CGAAAAGCAT ATCAGCCGTC TCGACGACCT CCTCGCAGGC 
ATTATTCGCG AAGGGATCGA AGCCGGAGAG TTCGTGGATA CGGACCCAGC GGTGGCAGCC 
AGATGCTTCG GCGCCAGCCT CGTGACCCTC TGTCATCCGC AGATCGTCGC CCAGTGTCTT 
GCCAAGGAAA ACCGCGCCAC TCCGGAGGAG CTGATCGAGT TCGCCATCCG GGCGCTGAGG 
AAATAG
 
Protein sequence
MSDLTDSIDA TRQENVTRIL DAAERLFRHY GYAKTNVADI ARELDMSPAN IYRFFASKTE 
IHQALCSRML GASYQQAHDI AYLPLSASER LRRYAQGQHK LTVETMLDEK KVHEMVVVAI 
EHNWHVIEKH ISRLDDLLAG IIREGIEAGE FVDTDPAVAA RCFGASLVTL CHPQIVAQCL 
AKENRATPEE LIEFAIRALR K