| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3735 |
|---|
| Symbol | |
|---|
| ID | 5318663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 179310 |
|---|
| End bp | 180161 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640775548 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001312481 |
|---|
| Protein GI | 150375885 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.153195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCC GGACGTCCCC GGTCTTCGTG GAAGGGCCTA TGCCGCTGAT AGCTCCGGCG
GTGATGTTCC TTTCACTCTT CTTTCTCGTT CCGCTTGGCT ACGTCGTGTG GATGAGCCTG
TCGCAGCCGG TCATCGGACT GCAGAATTTC GGCCGGCTGC TGAATTCCAG TCTGTTCGCG
TCGGTCCTTT ACAGCACGTT CAAGACGGCG CTCCTGGTAA CGCTGCTGAG CCTTCTCTTC
GCCTATCCGC TCGCCTATGC CGCGGCGAAC GGCTCGAAGC GCTTTGCAAC CTTCCTGCTG
ACGGTCGTCG CGCTCTCTTT CTGGACCAGC TATCTGGTGC GCACCTATGC CTGGATGGTC
ATCCTCGGCA ATCAGGGGCC GGTTACCGCG CTCCTCTCGT GGCTCGGCTG GGATCCCGCG
CCGAAGATCC TGTTCACCAC ATTCAGCGCC ACCCTCGCAA TGACCCACGC GCTTATTCCT
TTCATGACCA TGTCGCTCTT CGCCGTGATG AAACGGATCG ACCCGCTCTA TGTCCGCGCT
GCCGAAAATC TTGGCGCGCA TCCCCTTCGA GCCTTTGTTT CCGTCTATCT GCCACTGAGC
GCGCCCGGCA TCGTCAACGG CTGCACGCTC GTCTTCATCA CCTGTCTCGG CTTCTATGTC
ATGCCCGTCC TGCTCGGGAG CCCACGCGAC CAGATGATCG CCGGCATCAT TGGCGACCAG
ATTGAACAGA CCCTCGACTT CGGCCTCGGC TCGGCGATAT CGATCGTGCT TCTGGCGCTG
ACGCTCGCGG TATATGCGGT CTACAACCGC TTTTTCGGTC TCGACCGCCT TTGGGCAGGA
GGTGACCGAT GA
|
|---|
| Protein sequence | MKLRTSPVFV EGPMPLIAPA VMFLSLFFLV PLGYVVWMSL SQPVIGLQNF GRLLNSSLFA
SVLYSTFKTA LLVTLLSLLF AYPLAYAAAN GSKRFATFLL TVVALSFWTS YLVRTYAWMV
ILGNQGPVTA LLSWLGWDPA PKILFTTFSA TLAMTHALIP FMTMSLFAVM KRIDPLYVRA
AENLGAHPLR AFVSVYLPLS APGIVNGCTL VFITCLGFYV MPVLLGSPRD QMIAGIIGDQ
IEQTLDFGLG SAISIVLLAL TLAVYAVYNR FFGLDRLWAG GDR
|
|---|
| |