Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3200 |
Symbol | holA |
ID | 5324079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3374425 |
End bp | 3375456 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640792148 |
Product | DNA polymerase III subunit delta |
Protein accession | YP_001328859 |
Protein GI | 150398392 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1466] DNA polymerase III, delta subunit |
TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAA TAAAGTCGCA CGAGTTCGAC AACTTTCTGC AGCGATCTGC GGCGGGCTAC CGGCTTTTCC TGCTCTACGG TCCGGACCGA GGACTTGTGT CCGAACGCGC AACAGCGCTC GCCGAAACTT TCGGGATCCC TCTCGACGAT CCTTTTGCCG TCGTCAAAAT GGATGCCACG GGATTGCAGG GTGCCGGAAG CCTCCTTGAC GAAGTGAATG CAATCGGCCT CTTCGGCGGC GAGAAACTGG TGTGGATGCG TGGCGCCTCC ACGGAGAAGG CGCTCATCGA CGCCCTGCAG TTTCTCGCGT CAGATCCCCC TGTCGGCGCC CGTCTCATCG TCGAAGCGGG AGATCTGAAG AAGGGAGCGG CGCTGAGGAA GGTTGGCGAG TCTTCCCGTT CCGTCGCCTC AATCGCCTGC TACAGCGACG ACGCCCGTGG CCTGCAAGCC CTTATAGACA AAGAACTTTC CGATGCGGGC CTGCGCATCA GCCCGGCCGG GCGCGAGCGC CTCATGGACG CGCTCGGCGG CGACCGCATG GCCTCGCGCA ACGAGCTTCG CAAGCTAGCT CTCTATTGTC TCGGCAAGGA TATGGTCGAC GAGGTCGACG TCCTTGGGAT CGTGGGCGAC GCCAGCGCCA TCTCGGTGGA CGATGCGGTC GATGCGGTGC TGAAGGGCGA TCCTGACGCG CTGTTGCATG CTATGAAGAA AATAACCACG TCCAAGACGC CGCCGTTTCT CGTGCTTCAG GCTTGTCTCA GGCAGTTCCA GCAGCTCGAC GTCATGCGCG CCGAAATGGA TGCGAACCGC CAGCCTCCGG CCCAGGTGGT CGCGACCCTC GGGCGCGGCC TGCATTTCCG CCGCAAGCCG GTGGTCGAGG CGGCGTTGAA GCACTGGACC GCACCGGCGA TCCGGCGCGA ATTGAGCCGC CTGCAATCAA CGATCTACCA AAGCCGCAGC CGCCAGAGCC TCGAGGAGAG CCTTGTGATA CAGAATTTGC TGGCGATTAC GATCCAGTCG GCTCGGCGCT GA
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Protein sequence | MSEIKSHEFD NFLQRSAAGY RLFLLYGPDR GLVSERATAL AETFGIPLDD PFAVVKMDAT GLQGAGSLLD EVNAIGLFGG EKLVWMRGAS TEKALIDALQ FLASDPPVGA RLIVEAGDLK KGAALRKVGE SSRSVASIAC YSDDARGLQA LIDKELSDAG LRISPAGRER LMDALGGDRM ASRNELRKLA LYCLGKDMVD EVDVLGIVGD ASAISVDDAV DAVLKGDPDA LLHAMKKITT SKTPPFLVLQ ACLRQFQQLD VMRAEMDANR QPPAQVVATL GRGLHFRRKP VVEAALKHWT APAIRRELSR LQSTIYQSRS RQSLEESLVI QNLLAITIQS ARR
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