Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3140 |
Symbol | |
ID | 5324019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 3292227 |
End bp | 3292967 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640792090 |
Product | regulatory protein LuxR |
Protein accession | YP_001328801 |
Protein GI | 150398334 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATCA CGTTGCTCGT ACAGTTTCTG GCGCTTCTGG AAGAGATGAA GACGCGCGAG GAGATTCTGC CCGAGTTCGA GCGCCTGCTC GACCGCTGCG GCTTCGATTT TTACGGTGTC GTGCGTCAGC CGAAACCGCA TGAGAATCCA CTCAGGCTCC TTCTGGCCGG ACGCTGGCCG GAGGGTTGGC CGCAAATTTA CATTCGCAAG AAATACGTCG TCATAGATCC TACGATCCGC TTCCTCGGAC ATGCCCAGCG CGGTTTCCGC TGGCGCGACA CGCTCGTGGC CTTCCGTTCG GACCCGCACC GCAAGCGCAT GGAAAGCATG ATGATCGAGG CACGCAATCA CGGCCTCTTC GACGGCTACA TTTTTCCGGT GCACGGCCGC CGCGGACTCA TGGGCAATCT GACGGTAGGG GGGCGGGTGG TCGATCTGAG CCCGGTGGAA TTGAGCCTTT TCGACGCCAT CGCAAAGCGG CTGTTCTGGA AGCTGCTCGA ACTCACCGAT CCGGAGATCA TGGCGGAGCT CGTCTCGCGC GTCGAAGTCC AGATGACGCG GCGTGAAATG GAAGCGCTCC ATTACCTCGC CGACGGCATG ACGTCGAACG ACATCGGCAA GGTCCTGGAT ATTTCGAGCC ATACCGTCGA CTGGTACATG AACGGCATTC AGGAAAAACT GAAGGCGAAA AACCGGCACC ATGTGGTGGC GCTCGCCTTC CGCCTGGGAC TGATCTCGTG A
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Protein sequence | MNITLLVQFL ALLEEMKTRE EILPEFERLL DRCGFDFYGV VRQPKPHENP LRLLLAGRWP EGWPQIYIRK KYVVIDPTIR FLGHAQRGFR WRDTLVAFRS DPHRKRMESM MIEARNHGLF DGYIFPVHGR RGLMGNLTVG GRVVDLSPVE LSLFDAIAKR LFWKLLELTD PEIMAELVSR VEVQMTRREM EALHYLADGM TSNDIGKVLD ISSHTVDWYM NGIQEKLKAK NRHHVVALAF RLGLIS
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