Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2789 |
Symbol | |
ID | 5323659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2908274 |
End bp | 2909584 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640791734 |
Product | xylose isomerase |
Protein accession | YP_001328454 |
Protein GI | 150397987 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2115] Xylose isomerase |
TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCACAG GATTTTTCGG CGATACCGCT AAGATCAAAT ATGAAGGTCC GGAAAGCACC AATCCGCTCG CCTTCCGCCA TTACAACCCG GACGATGTCG TCCTCGGCAA GCGTATGGAA GACCATCTGC GCTTCGCCGT CGCCTATTGG CATAGCTTCG TCTGGCCGGG CGGCGATCCC TTCGGCGGGC AGACCTTCGA GCGGCCCTGG TTCAAGGACT CGATGGAGGC CGCGAAGCTG AAGGCGGACG TGGCCTTCGA ATTCTTCCAA TTGCTGGGCG CGCCATTCTA CTGCTTCCAC GACGCGGACG TTCGCCCCGA GGGGCGGAAT TTTGCCGAGA ACACGCGCAA CCTCAACGAC ATCGTCGATT ATTTCGCAAA GAAGCAGGAC GAGTCCGGCG TCAAGTTGCT GTGGGGCACG GCCAACCTTT TTTCGAACCG CCGCTTCATG GCGGGGGCTG CGACGAACCC GGACCCGGAT GTTTTCGCCT TCGCCGCGGC GACGGTTAAG ACCTGCATCG ACGCGACGCA GCGGCTCGGC GGCGAGAATT ACGTGCTCTG GGGCGGGCGC GAGGGCTATG AGACCCTGCT CAACACCGAC CTGAAGCGCG AGCTCGATCA GCTTGGCCGC TTTCTCAATC TGGTCGTCGA ATACAAGCAC AAGATCGGCT TCAAGGGTAC GATCCTGATC GAGCCGAAGC CGCAGGAGCC GACCAAGCAC CAGTACGACT ACGATGTCGC GACCGTCTAC GGCTTCCTCA AGAAATATGG TCTCGAGAAT GAGGTTAAGC TCAATATCGA GCAGGGCCAT GCGATCCTCG CCGGCCATTC CTTCGAGCAC GAGCTGGCGC TTGCCAATGC CCTCGGTGTC TTCGGTTCGA TCGACATGAA CCGCAACGAT TACCAGTCCG GATGGGATAC CGACCAGTTC CCGAACAATG TTCCGGAAAT GGCGCTCGCT TATTACCACG TCCTTGCGGG TGGCGGCTTC AAGACCGGTG GAACCAATTT CGACGCGAAG CTGCGCCGCC AGTCGATCGA CCCCGAAGAC CTGCTGATCG GCCATATCGG CGGGATGGAT TGCTGCGCGC GCGGCCTCAA GGCCGCAGCG AAGATGATTG AGGACAAGGC ACTCTCGGCG CCGCTCGAAG AGCGTTATGC CGGCTGGAAC GAGCTGGAGG CGCAAAAGAT GCTCCAGGGC GGCTTCTCGC TCGAGGAGAT CGAGGCTCGG GTTCTGAAGG CGGACGTAAA TCCGCAGCCG AAATCCGGGC GGCAGGAGCT CCTGGAAAAC GTGGTCAACC GCTACGTCTG A
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Protein sequence | MSTGFFGDTA KIKYEGPEST NPLAFRHYNP DDVVLGKRME DHLRFAVAYW HSFVWPGGDP FGGQTFERPW FKDSMEAAKL KADVAFEFFQ LLGAPFYCFH DADVRPEGRN FAENTRNLND IVDYFAKKQD ESGVKLLWGT ANLFSNRRFM AGAATNPDPD VFAFAAATVK TCIDATQRLG GENYVLWGGR EGYETLLNTD LKRELDQLGR FLNLVVEYKH KIGFKGTILI EPKPQEPTKH QYDYDVATVY GFLKKYGLEN EVKLNIEQGH AILAGHSFEH ELALANALGV FGSIDMNRND YQSGWDTDQF PNNVPEMALA YYHVLAGGGF KTGGTNFDAK LRRQSIDPED LLIGHIGGMD CCARGLKAAA KMIEDKALSA PLEERYAGWN ELEAQKMLQG GFSLEEIEAR VLKADVNPQP KSGRQELLEN VVNRYV
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