| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2667 |
|---|
| Symbol | |
|---|
| ID | 5323536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2772669 |
|---|
| End bp | 2773322 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640791611 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_001328332 |
|---|
| Protein GI | 150397865 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.324965 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA TTGAAGACCG CTGCCGCCTC GTGCTGGTCG CACCGGATAT CCCGGACGGC
CTGGAACGCG TGAAGCTCGT TGGCGATGCG CTGAAGGGCG GAGATGTGGC GTCGGTGATC
GTGCCGCAAT ACGGGCTTAG CGATGCGGAT TTCCAGAAAC ATGCGGAAGC GCTCGTGCCG
GTGATCCAGA AGGCCGGCGC CGCGGCCTTG ATCGAGGGAG ATACCCGCGT TGCCGGACGG
GCCAAGGCGG ACGGCATCCA TATCGCCGGC GCCGCCGCCG CCCTCGCCGA AGCGATCGAG
CGGCATGCGC CGAAGCTCAT TGTTGGTGGC GGCAATGCTA CCGACCGTCA CCATGCGCTC
GAAATCGGCG AATTGCGGCC CGATTACGTC TTCTTCGGCC GCACGGACGG CGATATAAAA
TCTGAGGCCC ATCCAAAGAA CCTGGCGCTT GCCGAATGGT GGGCGTCGAT GATCGAGATT
CCCTGCATCG TCATGGGCGG CATGGATCCG CAATCGGCGC TTGCGGTCGC GGAAACCGGC
GCGGAATTCG TGGCACTCCG CCTTGCCGTC TTCGGCGAAG CCGAACAGGC GCCGTCGGTG
GTCGCGGCCG TCAACGCCTT GCTTGACGAA AAAGCGCCAC GGTTTGAAGG TTAA
|
|---|
| Protein sequence | MSKIEDRCRL VLVAPDIPDG LERVKLVGDA LKGGDVASVI VPQYGLSDAD FQKHAEALVP
VIQKAGAAAL IEGDTRVAGR AKADGIHIAG AAAALAEAIE RHAPKLIVGG GNATDRHHAL
EIGELRPDYV FFGRTDGDIK SEAHPKNLAL AEWWASMIEI PCIVMGGMDP QSALAVAETG
AEFVALRLAV FGEAEQAPSV VAAVNALLDE KAPRFEG
|
|---|
| |