Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2495 |
Symbol | |
ID | 5323356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2579143 |
End bp | 2581281 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640791432 |
Product | TonB-dependent receptor |
Protein accession | YP_001328161 |
Protein GI | 150397694 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.237347 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATTTT CTAAGAGATT GCAGCCGTTT CTTGGCTGCA CGGCAATCGC AATCGTCGCA ACGGCAGTAT CGATCGGGCC AGGCACGCGC ATTGCGATGG CTCAGGACGC GACGCCGAGC GATGAGGATG CCGCGACGAC GCTGGCGCCG ATTATCATCA CTGGCGAGAA ATTCGGCCGT GATCAGTTCA CCACCTTCAC CAGTGTCGAG GTTTTCACAG GCGGAGAACT TCACGATCTC GTCCGACCGA CACTCAATGA TGCGCTGAAC AGCTCACCCA ACATCCGTGC CTTCATGAGT GGCAGAGGTA ATTCCGACAT TGTCATCCGC GGTTTGAGCT CGGAGGGTGT AACGGCTCCG AGCCGCTCGA ACCCGGTGAT TTCGGTGGTC GTGGACGGCG CAGAACAGGG TGTCGAGGCA ACCCGGCGCG GGACGCGAGG CCTCTGGGAC GTCGAGCAGG TCGAAGTATT GCGTGGTCCG CAATCTACGC TTCAGGGACG CAACGCGCTC GCGGGATCCG TCATCATCAA GACGAAAGAT CCGACTTATA CCCCCGAAGC CAGTATTGAA GGCCTGATCG GAACCGACGA GTACAAATCC GGCGCCTTTG CCGTTTCGGC GCCGATCGTC GAAGACGAGC TGGCATTTCG TATCTCCGGG CAAATCTTTC GCCGGGACAA CGACATCGAC TATGTCGATC CGTCCATTTC GGACGTGGGC GAAGAGGAGT TCGAGGAAAT TCGCGGCAAG CTGCTCTGGG AGCCTGCAGA AATACCGGGC CTCCGGGGGC TGTTTACCGT TAGCCGTACG CATGACAAAC CGGCATGGGC TCTGGTGAGC GGTCCCGATT TCTTCGCCAG ACGATTCGAT GATACGACTG CAGAACGGCG CGATACTTAC GTTAACCGCT ACATCGCCGA CCTGACCTAC GAGATCAACG AGGACTGGAA GATTCAGTCG ATTACGTCGT TCGTAGACAC GGACGTGGAG ATTACTTCTC CTCAAACGCC GACGCTTCAA CAGTTCCAAC TCATCCGTGA TGACACACGC GAGGGCGGAG ACTTCTCCCA GGATATCCGT CTCACTTACG GATCGGCGGA GTCTCAATTT TCGGGCGTCT TCGGTCTTTT CGCAGGCCGA TCCACCTTCG ATCTCGACTC GAACATCCGG GTGGTGGCAG ATCCAGTCAC CCCGTTCATC TTGCCGTTCC AGCAGCTACA GGCGAAGAAC AAGAGCGAGA CGACCGCTCT GTACGCGGAC ACCCGCTACG AGTTTGTCGA TCGATGGACG CTGCTGGCCG GCGGTCGGCT GGTCCATGAC AAGGTCTCGG CCAACTACAC GGGCAGCCTG CTGGACGCCT CCACCTTCGG ATATGTTCCG CTTACGGAGA ACAATTCGGT CTCAAACACC GAATTCCTGC CCAAGATCGG CCTTGCCTTT GAACTCGACG AGAACCAGAA TCTCGCCGCT ACCATCAGTA AAGGCTACCG CCCGGGCTAT TCGGAACTCA TTATCGGCAC GACCGACATC AATACGGTCA GGCCGGAATC TCTCTGGGCC TATGAACTTG CTTATCGTTC CAAGTGGCTG GAGGACCGTC TGCAGGTGAA CGGGAACGTC TTCTACTACG ATTACACGAA CCAGCAGGTT CCAATCGAAT TCGATCCTCG CTTCCCAGCC CAGACGATCA GTCTCAATGC AGCCGAATCT CATTCCTATG GTGCCGAAAT CGAAGTTCGT TACGGCTTCG ATTCTGGCCT AGAGCTCTTC TCTGGGCTCG GCCTCATGAA GTCGAAGTTT GATAAGGGCG ACTTCAAGGG CAAGGAATTT CCCGAAGCGC CATCGCTCAC CGCCTCTTTC GGTGGCGTCT ACAAGCATGA AAGCGGTTTC TTCGCAGGCG GCGACGTGTC CTTCACGGAC GGCTACTACA GCAAAGGCGA CGTGAAGAAT GTTCGTGCCC TGGATTCGTT TACTGTTGTA AATGCGAATA TCGGCTACGA AAAAGACAAC TTGAAGATCA CTGCGTTTGC CAGGAATCTG TTCGACGAGG AATACCTGAC CTCGATTTCG AGCAATGGCA ACCTGGCGAC CATCGGCGAC GGGCGCTCGT TCGGCGTACG CGTCAACGCC ACCTTCTGA
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Protein sequence | MTFSKRLQPF LGCTAIAIVA TAVSIGPGTR IAMAQDATPS DEDAATTLAP IIITGEKFGR DQFTTFTSVE VFTGGELHDL VRPTLNDALN SSPNIRAFMS GRGNSDIVIR GLSSEGVTAP SRSNPVISVV VDGAEQGVEA TRRGTRGLWD VEQVEVLRGP QSTLQGRNAL AGSVIIKTKD PTYTPEASIE GLIGTDEYKS GAFAVSAPIV EDELAFRISG QIFRRDNDID YVDPSISDVG EEEFEEIRGK LLWEPAEIPG LRGLFTVSRT HDKPAWALVS GPDFFARRFD DTTAERRDTY VNRYIADLTY EINEDWKIQS ITSFVDTDVE ITSPQTPTLQ QFQLIRDDTR EGGDFSQDIR LTYGSAESQF SGVFGLFAGR STFDLDSNIR VVADPVTPFI LPFQQLQAKN KSETTALYAD TRYEFVDRWT LLAGGRLVHD KVSANYTGSL LDASTFGYVP LTENNSVSNT EFLPKIGLAF ELDENQNLAA TISKGYRPGY SELIIGTTDI NTVRPESLWA YELAYRSKWL EDRLQVNGNV FYYDYTNQQV PIEFDPRFPA QTISLNAAES HSYGAEIEVR YGFDSGLELF SGLGLMKSKF DKGDFKGKEF PEAPSLTASF GGVYKHESGF FAGGDVSFTD GYYSKGDVKN VRALDSFTVV NANIGYEKDN LKITAFARNL FDEEYLTSIS SNGNLATIGD GRSFGVRVNA TF
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