Gene Smed_2322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2322 
Symbol 
ID5323183 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2403389 
End bp2404156 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content65% 
IMG OID640791260 
ProductABC transporter related 
Protein accessionYP_001327989 
Protein GI150397522 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1124] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.888289 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGG CCGTATCCGT CGAAAATCTG AGCGTCGTCT TCGACGAGTT CAAAGCACTC 
GATGCCGTCA GCGTGGATGT AGGGAAGGGG AAATCCTTCG GGCTCGTCGG CGAGTCCGGC
TCGGGAAAGT CCACCCTGTT GCGCGCCGTC GCCGGCCTCA CTGGCGCAAG CAAAGGCGCG
ATCCGCGTTT CGGGCCGCGA GGTTCGTGGG ACGCGTCGTG ACAAGGCCTT TTATCGGGCG
GTGCAAATGG TGTTCCAGGA TCCTTACGGT TCGCTGCATC CGCGCCAGAC GGTCGACCGG
CAGCTGATGG AGCCTCTGGC GATCCACGGT ATCGGCGACA GCGAGCGCCG CATCCTGAAG
GCCCTGGACG AGGTGGGCCT TGGTTCAAGT TTCCGCTTCC GCTATCCGCA TCAGCTCTCC
GGCGGACAGC GCCAGCGCAT CGCGATCGCA CGCGCGCTTA TCCTGGAGCC CTCGATCCTG
CTCCTGGACG AGCCGACCTC GGCGCTCGAT GCGTCCGTGC AGGCGGAAGT GCTCAACCTC
CTCGAAGAGG TGCGGCGCGA CCGCGGCCTG ACCTTCATCA TGGTGAGCCA CGATCTCGGC
GTCGTCACCC ATATGTGCGA ACGGCTGGCC GTCATGCAGA ACGGCCGCGT GGTGGAGCGG
CTTACCTCGG CGGATCTGGT GGCCGGGCGT ATCGCGGAGG CGTATACGCG CAATCTCATG
GTCGCGAGCA AAGGGTTCAG GCGGGAAGCG GTGGCGCAAA GCGGGTAG
 
Protein sequence
MTEAVSVENL SVVFDEFKAL DAVSVDVGKG KSFGLVGESG SGKSTLLRAV AGLTGASKGA 
IRVSGREVRG TRRDKAFYRA VQMVFQDPYG SLHPRQTVDR QLMEPLAIHG IGDSERRILK
ALDEVGLGSS FRFRYPHQLS GGQRQRIAIA RALILEPSIL LLDEPTSALD ASVQAEVLNL
LEEVRRDRGL TFIMVSHDLG VVTHMCERLA VMQNGRVVER LTSADLVAGR IAEAYTRNLM
VASKGFRREA VAQSG