Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2099 |
Symbol | |
ID | 5322959 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 2159934 |
End bp | 2161142 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640791037 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001327767 |
Protein GI | 150397300 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4597] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.979172 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.132387 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGTGC ATCATGCGAA AGCGGCCGAA CATGCGGTCG ACGACGATCT CCTCTCCGCT CGCCGGCGCC GCAATCGGAT CAGGTACGGA GCCACCCAGT TTGCCGTGAT CGCGGCCGCG ATCACCCTGG TGGTCCTTTT TGCGCTTGCC GTGAAGGAAG GACTTGCCCG GCACGGGATC AGGTTCAGCT TCTCGTTTCT ATGGGACGCC GCCGGATTCG ACCTCAGCGA GGGCAAAACC TTCGTCTTCG ACGGCACGTT CTGGCTGGCC TTTACGGAGT TCACCTCGGA GCGTTCGATA GCGCAGGCAT TCGCCGCCGG AATCGTGAAC ACCACCAAGG TGGCGGTTCT CGCCATTGTT CTGAGCACCA TGCTCGGAGT CCTGCTCGGT GTAAGTCGGC TCTCCACCAA TTGGGTGGCT CGGAGCCTTT CCTTCTGGTG CGTCGAGTTC GTCCGCAACA CGCCGCTCCT TATCCAGCTC GTCTTCTGGT ACTTCGCGGT CATCCTGCAT TTCCCACCTA TCGCGGCCGC GGCCGAATTC TACGGCGTCG TCATCAGCCA GCAAGGCCTC TTTTTTCCGG CCCTCGTCTG GAAGGGCGAA GGTTCGCCGG TCGCCATCGC AATGGCGACT GCTTGCTGGG TCGCAATTCT CGGACTGGTC TTCGACAAGC ACAGACTGGT CCGCCGGGTT TGCATGGGTG CCATAGTCGT GCTTCCTTGC CTGATGCTGC TGACCGGGAT CGTGGAACTG GATTTCCCCG TGGCATCGAA GTTTCGGGCC AAAGGTGGTA CAGGCATGAG CCCCGAAATG GCGGCACTGC TTCTGGCGAT CGTCGTCAAC AGCGCTTCCT ACATTGCGGA AATCGTGCGT GGAGCGATCG ATGCCTTGCC AAAGGGGCAA TGGGAGGCGG CAGCCTCCCT CGGACTGAGC CGCCGCGATA CCGTCCACGA CATCATTCTC CCGCAGGTCT TCCGGGTCGT GCTGCCTTCC TTCGGAAACC AGTATATCAG CCTCACGAAA AACACGGCCC TCGGCATTGC GGTCGGATAT CCCGAACTCT TCAACATCTA CGGCACCATA GCGAACCAAA CGGGCCATAG CCTCGAAGGC ATCCTCATCG TCATGGCGTC CTATCTGATC CTTAGCTGGG CTATCAGCGC GACCGTCGCC TGGGCCGACC GCCGCCTGAG CAAACGCGGA GCGATGTGA
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Protein sequence | MNVHHAKAAE HAVDDDLLSA RRRRNRIRYG ATQFAVIAAA ITLVVLFALA VKEGLARHGI RFSFSFLWDA AGFDLSEGKT FVFDGTFWLA FTEFTSERSI AQAFAAGIVN TTKVAVLAIV LSTMLGVLLG VSRLSTNWVA RSLSFWCVEF VRNTPLLIQL VFWYFAVILH FPPIAAAAEF YGVVISQQGL FFPALVWKGE GSPVAIAMAT ACWVAILGLV FDKHRLVRRV CMGAIVVLPC LMLLTGIVEL DFPVASKFRA KGGTGMSPEM AALLLAIVVN SASYIAEIVR GAIDALPKGQ WEAAASLGLS RRDTVHDIIL PQVFRVVLPS FGNQYISLTK NTALGIAVGY PELFNIYGTI ANQTGHSLEG ILIVMASYLI LSWAISATVA WADRRLSKRG AM
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