Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2046 |
Symbol | |
ID | 5322905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 2097741 |
End bp | 2099057 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640790983 |
Product | diguanylate cyclase |
Protein accession | YP_001327714 |
Protein GI | 150397247 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.419907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.30363 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGGCC GCTACCAATG GCCTTGCATA CTGGCTGAAA CGCAAGCCGC ACTTTATTTT AGCACGACAG GCCGTTTCGA AATGAGCTTT CTCTCCGCCA TACCCGCCAT CGCACTTCTT GCCATGCTTC CCGTCCTCGC TTCTCTGCGG CGCATGCCGG TTGCCGGTGT TCGGGAAATC GCGCTCGGCT GCGTATTGTC GGCGGCGTCG GCAGCGGCGC TGACCGTTGC GACGGCCATG CAGGCGCCGA TCGCTGCAAT GTTCGGCTAT GCAGGTCTGG TCGTCACCCT CTTCTTTGTC CTGCGAGGCC TTCAACGGTT CTTCGCGCTA TCGATGCCAA CCCCGCTTTT TCTGGTACTG GCGTTCTCGA GCGGCGTGGT CGGGTTCATC ATTGCGCTTG GCGGCAATGG AAGTGCCGCC GCCACCATCA TCGTCGTTGC GGGCGTGACC GCGCTCCCAC TTCTTATCCT CGGCCTGGCC GCGGCCAATC GCTGGCCAAA GGAAATGCCG GTGATCCAGG TCGTCATTAT CGGCTCCGTC GTCGTGGTCT TCACCGCCTT GGCTCATATC CTTGGCCCGT CGTCCCACTT CACGGCCGAG CGATCGGGAT CGCCCGGCTT CATTCTGTTC GATTTCTTAG TCGTCACCAT GCAGGCGCTT TGTCTTCCGC TTGTCTTCAT TGCCGTGATC CTCACGATGC AGGCGCGCAT CATCGCCGCG TTAAGAGCCG CGATCGCTCG GGACGGGCTG ACCGGGGCGC TGTCGCGCGG AGCACTCATG GAAGAAGGCG AGCAGATCTT CGCCGAGTGC CTGACCCGCC GAAGGCCGGC TGCCTTCCTG TTGCTCGACC TCGATTTTTT CAAGCAGATC AATGATCAGT ACGGGCACGC CTGCGGCGAC ATGGCACTCG CGCACTTTGC CGACACCGTC TCGACGTTCC TCGCAGGTCG GGGCGTTCTC GGACGGATCG GAGGAGAGGA ATTCGGCATC GTCCTGCCGG ACCACACTGA AGAGCAGGCA AAGGCGCTTG CCGAAGAGAT CTGCCGCATC GTGCGCGAGA CGCCTGCCGG CCGCTCTCAT CAGCGCATCC GTTTGACCGT GAGCATAGGG ATCGCAGCCG CCACCGCGCA CGAGACGATT GCGGATGTGA TGATCCGCGC AGACCTGGCC CTCTACGACT CCAAGGCGGA CGGTCGCGAT CGTTGCACGA TCGCCAGGGA TCGCCGGATT GACTCGAGCG CCCGCGCCCT TGCAGCAGCC GCCGCGCAAT TGCGGGAAGC GCGCGCCGGC CGGCCGGAAT TGCGCCACTC GGCGTGA
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Protein sequence | MRGRYQWPCI LAETQAALYF STTGRFEMSF LSAIPAIALL AMLPVLASLR RMPVAGVREI ALGCVLSAAS AAALTVATAM QAPIAAMFGY AGLVVTLFFV LRGLQRFFAL SMPTPLFLVL AFSSGVVGFI IALGGNGSAA ATIIVVAGVT ALPLLILGLA AANRWPKEMP VIQVVIIGSV VVVFTALAHI LGPSSHFTAE RSGSPGFILF DFLVVTMQAL CLPLVFIAVI LTMQARIIAA LRAAIARDGL TGALSRGALM EEGEQIFAEC LTRRRPAAFL LLDLDFFKQI NDQYGHACGD MALAHFADTV STFLAGRGVL GRIGGEEFGI VLPDHTEEQA KALAEEICRI VRETPAGRSH QRIRLTVSIG IAAATAHETI ADVMIRADLA LYDSKADGRD RCTIARDRRI DSSARALAAA AAQLREARAG RPELRHSA
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