Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1847 |
Symbol | |
ID | 5322705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1922970 |
End bp | 1924259 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640790785 |
Product | integrase catalytic region |
Protein accession | YP_001327517 |
Protein GI | 150397050 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4584] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.154194 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAGCG CGATTTTATC GCATCCTGCA TTGTCGCTAA CGATGCAGGG CGGGGATATG CTTCAGGCTG ACGAGGTGGT GGCAATGCTG CGGCTGCACG AGCTTGGTTG GGGTAGCAAA CGTCTATCGA AAGAATTTGG ATGCGCGCGG AATACCGTTC GCCGATATCT TCGAGAGGGC GGAGCTGTAC CGTTTAAACA GCCTGCCCGG CGCAGTGCGT TCGACGGGCT TGATGATTGG CTTCGCGAGC GTTTTTTCCG GCATGACGGT AATGCGGATG TGATCCGCCA AGAGTTGGCG AGCGAGCACG GAATTGTCAT CGGTCTGCGT TCTGTGGAGC TCCGCGTACG GCAGTGGCGG CGAGAGCTAA AGGCACAGAA GCGGGCGACG GTCCGCTTCG AGACGGCGCC GGGCCATCAG ATGCAGATCG ACTTCGGTGA CACGAAGGTG TGGATCGGCG ACGAGCGGGT TCGGATTCAC CTGTTCGTGG GGACGCTGGG GTATTCGCGG CGGATGCATG CTCGCGCGTC ACTCAGGGAG CGCCAGGCAG ACTGGTTTGA AGGCATGGAA GGCGCTTTCC TGCGGTTCGG CGGGGTTCCG GTGGAAGTGC TGATCGACAA TGCGAAGGCC CTGGTCGAAC ATCATGATCC GGTGACGCGA GAGGTGAGAT TCAACGCGCG ACTGCATGCT TTCGCCCGTT ATTGGGGCTT CACGCCGCGG GCCTGCGCAC CGTATCGGGC GAGAACGAAA GGCAAAGACG AGCGCGGGGT CGGTTACGTC AAGAAGAACG CGATCGCCGG GCGCCGCTTC GAGAGCTGGG CCGAGTTTGA AGCGCATCTG GATCGATGGA CACGCGAAGT TGCCGACCAG CGTGAACACG GCACCACCGG TGTCAAACCG GCGGAACGCT TTGCCGACGA AGCCAGGGAG CTGCGCCCGC TGGCCGGACG GGCACCCTTC GGGCAATTGC GGGATCTGGT TCGCAAGGTT CAAGCCGATT GCGCGATCGA CCTCGACACC AACAGCTACT CGGTGCCCTG GCGCCTGATC GGCGAGAGTG TTCAGGTCGT GGTGTTGGCG GGGCGCGTCA TCATCCGGCA TGCGGGCCAG GTGGTGGCTG ATCATGCCCT GTGCGATGGA CGACGACAAC GGATCGTGGA CCGGGCGCAT TTTGTCGGTG TTGCCGGCGC CGAGGGTCTG GTGCGAGCCG CCGCTCCCAT CGAGCTCCCC CCTCCCACCC TGTTGCGCCC GCTTGCGGAA TACGAGGCGG TTGCCGGAGG AGGCTGGTGA
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Protein sequence | MTSAILSHPA LSLTMQGGDM LQADEVVAML RLHELGWGSK RLSKEFGCAR NTVRRYLREG GAVPFKQPAR RSAFDGLDDW LRERFFRHDG NADVIRQELA SEHGIVIGLR SVELRVRQWR RELKAQKRAT VRFETAPGHQ MQIDFGDTKV WIGDERVRIH LFVGTLGYSR RMHARASLRE RQADWFEGME GAFLRFGGVP VEVLIDNAKA LVEHHDPVTR EVRFNARLHA FARYWGFTPR ACAPYRARTK GKDERGVGYV KKNAIAGRRF ESWAEFEAHL DRWTREVADQ REHGTTGVKP AERFADEARE LRPLAGRAPF GQLRDLVRKV QADCAIDLDT NSYSVPWRLI GESVQVVVLA GRVIIRHAGQ VVADHALCDG RRQRIVDRAH FVGVAGAEGL VRAAAPIELP PPTLLRPLAE YEAVAGGGW
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