Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1717 |
Symbol | |
ID | 5322575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1796739 |
End bp | 1797920 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640790655 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001327387 |
Protein GI | 150396920 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.25226 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAC GATCCTGGCT CCTGCGGCAC GCCAAATCCT TCGTCCTGAT TGCGCCACTG GCGCTATTTC TTGCCTTCTT CTTCGTTGCC CCGCTGGTAA CCATGATGAA GACGGCCGTC TCCGATCCCG TCGCTTCTCG GGCGCTTCCG AATATCGCCG CTGCCCTCGA CGGCTGGGAT CGTACAAGCG CCCCGCCGGC TGATGCGCAG AGAGCGTTGG TCGCGGATAT CCGGGGAATA CAGGAGGATG AACTGTTCGG TGACCTGGTT CGCAGGCTGA ACAGCGCGAA GTCCGGTTTC CGTACTCTGA TGGGCAAGAC CAGAAAGGCC GTTGCCGAGA ACCCGAACCT CGATGACCTG ATTTCCGTCG ACAAGCGATG GAGCGACCCG GCATTTTGGA TTGCGGTGCA GGATGCGGCG AGCTCGCCCG TCACCGACAG GAACCTTCTT GCAGCTGTCG ATCTGACGCG CGATTTGAAT GGCAATATCA TCGAAGCGCC TGCCGGTACC TCGGCGAACC GCGAAACGCT GATTCGCACC ATTGTCATGG CCGGCATGGT AACCATATGC ACCGTTCTGA TCGGGCTGCC TTTCGCGATG GTTGCGGCCT CGACCACAGG ATGGAAACGT CAACTCTTGC TCGGAGCGGT GCTGCTCCCG CTCTGGACGT CGCTCCTCGT CAGGACGGCC GCCTGGTACA TCATTCTGCA AGACAACGGC TTGATCAATT TAACACTCCA GGCGATCGGC CTGACCGAAG GGCCATTGCC TCTGATCTTC AATCGGCTCG GCGTCGTCAT CGCGATGACC CATGTCCTGC TTCCATTCAT GGTGCTGCCG ATCTTCAGTG TCTTGATCGG CATCCCCAAG AACCTCATGC CGGCTGCGGC CTCGTTGGGC GCTTCACCTG TCCGGTCATT CCTTTCGGTG CTTCTGCCCC TCAGCCTGCG AGGCGTCGTG TCCGGATCGC TGCTCGTATT CATGAGCGCT CTTGGCTACT ACATCACGCC CGCACTGATC GGCGGTGCAA AGGACCAGAT GATCAGCGCC GTGATCGCTT ATTATGCGAC GGGGGCGGCC AACTGGGGCA TGGCCGGCGC GCTCGGAATC GTTCTGCTGA CCGCCACGAT CATTCTGTAT GTCGTGTATT TGCGGCTCTC ATCCGAGGAG GCAAAGGCAT GA
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Protein sequence | MKQRSWLLRH AKSFVLIAPL ALFLAFFFVA PLVTMMKTAV SDPVASRALP NIAAALDGWD RTSAPPADAQ RALVADIRGI QEDELFGDLV RRLNSAKSGF RTLMGKTRKA VAENPNLDDL ISVDKRWSDP AFWIAVQDAA SSPVTDRNLL AAVDLTRDLN GNIIEAPAGT SANRETLIRT IVMAGMVTIC TVLIGLPFAM VAASTTGWKR QLLLGAVLLP LWTSLLVRTA AWYIILQDNG LINLTLQAIG LTEGPLPLIF NRLGVVIAMT HVLLPFMVLP IFSVLIGIPK NLMPAAASLG ASPVRSFLSV LLPLSLRGVV SGSLLVFMSA LGYYITPALI GGAKDQMISA VIAYYATGAA NWGMAGALGI VLLTATIILY VVYLRLSSEE AKA
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