Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1643 |
Symbol | |
ID | 5322501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1737035 |
End bp | 1738156 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640790583 |
Product | outer membrane protease |
Protein accession | YP_001327315 |
Protein GI | 150396848 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4571] Outer membrane protease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.13084 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCTGCG AATACTTCCA TTCCCTAAAG GCGTTGAAGC TGCCAGCCTC GCAACGGCAG GACGACACCG GTCCCTCAAC ACCAGCGGCT TGCCAAGTGG GCAAGTCTGA CACGAAGGGG ATCCGAGGCG AAGAAGCTCA GGCTCAAGAC GGAGGCGCTG TACGAAAGAC GCGGTCAGCT ATGAAGCGCG TCTCCATCAG ATCCGTAGCG ATCTCCTGTT TTCTGTACGG TGCCCCATCA TTCGCCGCCG CAGACAACGC TCTGTTTTCC TCCGACGATG GCAACGTCGT CGTTTTCGGC GATATCGGCC TCGCCAACAT AAAGGCGCAG GAATTTTTCT ATGTCGGCGA CCACAAGATC AGCCAGTTGA ACTGGGAGAG TAAAGGAGTC ACTCTTTTCA CGGTTGGCGT CGACGGGCAG ATCGACAACG ACTGGAGCTT GAAGGGCAGC GTCAAAGTCG GCACCGGCGG CAATGGTCAC CTGGTTGACT ACGACTGGAC GATCATCGAG CGCGAAGACT GGAGCGACCG CTCAATCCAC CCGCTTACCG AACTCGATCA CTATGTCGCC GCAGCGATCG AGTTGGACCG GATCATCTAC GGCAACGACA CCAGCAGTAT CGCGGTCGGC GCTGGTATGC GCTATACCGA CGTCAAATGG ACCGCCTATG GCGGGTCAGG CATCTCTACG AAGAAAACGT TCCGCGATAA ACGTTGGGAA TTGCTAGACT GGGAAAGAGG CGCAAGCTAC CGGCAAAAAA TTCCGGTGGG CTTCCTCAGC CTGAGCGGCG AACACGTCCT CGGCGATCTT ACCATCAGCG GCGGCCTTCA GACCGGTCTG AGCTTCGGCA TCAAGAGCAT CGACGACCAT TGGCTGCGCA ACCTGCGTTT TTCGGATGAC ATGTCTCCGG CACCGACAAT CGGCGCCAAT GTCGCCGTCA GCTATGCGGT GACGCCCGGT GCTTCGCTTT ATCTGTCCGG TTCGTTCGAG CGGGTGTTTC ACAGCCGCGG GGACAAGGAA CGTCACAACT TCGCGACAGG CGAAATTGAA TTCCGCAAGG ATTATGCCGG GGCCACGTTC GAGGCAATGT CAGTCTCCTT CGGGCTAAAG GGCACGTTTT GA
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Protein sequence | MVCEYFHSLK ALKLPASQRQ DDTGPSTPAA CQVGKSDTKG IRGEEAQAQD GGAVRKTRSA MKRVSIRSVA ISCFLYGAPS FAAADNALFS SDDGNVVVFG DIGLANIKAQ EFFYVGDHKI SQLNWESKGV TLFTVGVDGQ IDNDWSLKGS VKVGTGGNGH LVDYDWTIIE REDWSDRSIH PLTELDHYVA AAIELDRIIY GNDTSSIAVG AGMRYTDVKW TAYGGSGIST KKTFRDKRWE LLDWERGASY RQKIPVGFLS LSGEHVLGDL TISGGLQTGL SFGIKSIDDH WLRNLRFSDD MSPAPTIGAN VAVSYAVTPG ASLYLSGSFE RVFHSRGDKE RHNFATGEIE FRKDYAGATF EAMSVSFGLK GTF
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