| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1538 |
|---|
| Symbol | |
|---|
| ID | 5322396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1623967 |
|---|
| End bp | 1630125 |
|---|
| Gene Length | 6159 bp |
|---|
| Protein Length | 2052 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640790483 |
|---|
| Product | chemotaxis sensory transducer |
|---|
| Protein accession | YP_001327215 |
|---|
| Protein GI | 150396748 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA AGAAGACCAA CGAGTCGATC GACGAAAAGG CGTTCGAGGC GCTGGAAGCG
GCCTTGAAGA TCGACTTTGA CGACCTGAAG TCGGCATTGA ACGACGAGGT TTCTCCGAGC
GAGCCGGAAG CAAAAGCGTC CGAGCCCGGG AAGCAGGCTG CCGGCTCCGG TGAGGCCCGC
GCCGCACGCC CGCAACAAGA TTCTCAGACG CAACCACGCG GCACGGAAGC ACCGCGCAGC
TTTGCGAGCG AGATGGCGCC GAAGCAGCCC CCCTTGGCGC CCGCCAACGA CGACACGCGC
AAGTCCCCTG CCGCAACGCT GCGCTCGCTC GAGGTCCGCT CCAGCCGTGC GGCGATACGC
GTCGCTGCGC TCGTGTCCTT AATCTGGACC GCAGCCGCGC TCGGTGTTGC CCACCTTCTT
TATGCGCCGG AGATCTGGCA GATCCGCTCT CTCGGCGATC TGGCAGCGAT GCCCGGTGTG
ATTGGCGTCC TGCTTGGCAT CGCCCTGCCC GTCATGCTCT TCTTCTCCTT CGCGATCATG
ATCGCGCGAG CCCAGGAACT GCGCAGCGCA GCGCGCTCCA TGGCTGAGGT CGCGATGCGG
CTCGCTGAAC CGGAGACCAA TGCCGCGGAC CGCGTCATGA CGGTCGGCCA GGCCGTGCGC
CGCGAAGTCT CTGCGATGAA CGAGGGCATA GAGCGCACCA TAGCCCGGGC AACCGAACTC
GAAGCGCTTG TGCATTCGGA AGTCAGCGCA CTCGAGCGCA GCTACAGCGA TAACGAGCTG
CGGGTCCGCA CGCTCGTCCA GGAGCTTGGT CTCGAGCGCG AAGCGATCAT CGGCCATTCT
GAGCGCATCC GAACGGCAAT CGCAGGTGCG CACACCAAGC TGAAAGACGA CCTGGAGACG
GCAAGCGAGG ACATTGCCTC GCGCATCGCC GTTTCCGGCG AAGCCTTCGC TTCACTCATA
GACACCCGCG CCGCAGCACT TACGGACAAA TCGGATCATG CGCTCGAAAA CCTGAGCACG
ATGCTGAGCA CCCGGACCGA CGCGCTGCTC TCGGGCCTGA CGACTGCTGG AGTGGCCCTC
AGCAGCGAAT TCGACTCGCG CCTGGACGCA CTCAGCGAAA ATCTCACGCA GCGCGGCGAG
CAGCTGCTCA GCCAGTTCGA AACCCGCGCC TCGACGCTCG ACGCCAACAC CGAGAAGCTC
AACGCCGCGC TGAACGAACG CGCCCGTCAG CTCAACGAAA CACTGATCGC CCGGACGCGT
GACCTCAATG AGAGCATCAG GATAGGCCAG CAGGCTATCT CCGGCGGCCT CGATGACGTG
CTTTCTTCGC TCAACACCGC ACTTGATGAA AAGGGTGCGA GCTTCCGCCA GAGCCTCAAA
TCGAGCGCCG ACGACGCGAT CATGGATCTC GATCTGCGCG GCGGCTTCTT CGAGGAGAAG
CTGCAGACCA CGGTCGGCCA TCTGGCAACC GCTTTCGACG AACGCTTCCA CGAATTTGCA
AGCGCCTTCG ACAAGCGCGC CAGCCAGCTC GACACGAAGC TCATGGAAAG TCTCCACCGT
ATCAACGAGA CGGTATCCGG CGGCTCGGAG GCTATCGGCG GCGCACTCGA CAGCAGTGTG
GAAAAGATCA ACTCGGCGCT TTCCGACCAG TCGCTGACCT TGGCAACGGC GCTCGGTGCG
ACACAAGATT TCATCGAGGA GACGATCGGC AGCCGCACCA ACGAACTCAG CAGCCTGATC
GGCAACGCGC ACAACCGCAT CGAGAGCGTC CTATCGGACA AGACCGGTTC GCTGATGGGA
GCCCTGACCG AAGCACAGGA CCGCATCGAA AACGGCTTCG GCAAGCGCGC AGATGCGCTC
GCCGAAGCGC TGACGACAAG CGAGCAACGC CTGACGGATG GGCTCGACTC CCGCACGTCC
GCCTTCATCG ATGGCTTGCA GTCGGCTCAC GCCCGTATCG AACAAACCCT TACCGGCTCC
ACGGACGAGA TCACGAGTGC GATCGCCGCA AGCCAGCATC GGCTCGACAA CACGCTTTCC
GAACGAACCG CAGCGCTGTC GGGCGCCCTC GCCTCGGGAG CAAGCGTCAT CGAAAATGCT
GTCGGCGGCA CCGCCGATCG GCTGGAGCGC GTCCTCTCCG AGCGCGGCCG AACGATCACC
GACGTGCTGT CCACTCAGAC CACGGCACTG GACGAAGTGC TTGCGGAGCG CGCGACGCAA
ATCAACTCCA CCATGTCGGC TCGCGCAAGC GAAATGGCCG ACTCGCTCAG CCGCCACGCG
GAGGATGTCG CCGATAGCCT GACGTTCCGC GCCATGGCGG TCGCAGAAAC CATGACCGAC
CGCGTCGGCG AGATCGAAAA CAAGCTTTCG CAGAGTGTCT CCGAAGTCGC CGAAAACTTG
GGGGGCCGGG TCAGTCTGAT CGCCGGCACA CTCACCGATA CCAGCGCCCG TATTGCCGAG
GACCTGAGCA GCCGCGTCGG AAGGATATCC GAGACCTTGG CAGGGACCAG CGCGGAAATC
GCGGAGGCGC TTACCGCCCG CACGTCTGAA GCTACAGCGT CGCTTGCCGG AAAAGCCGCC
GAAATCGAAC AGACGCTGAC CGGCAGGGCC GAACACCTGC GCGATACGCT GACGACGACA
CACGACCAGA TCCGCTCGAC GCTCGACGAC CGGATCAGGG CGATCAACGT TTCAGTCGGA
CAAGGCCGCG AGCAGCTCGA AGAACTGCTC TCCGACCAGT CGATGGCGAT GGCGACGACG
CTTGCGACCA GTGCCAGCAT GCTTGAAATG TCGATCGAGG AGCGTCAGGC CGCAATCGCC
GGGGCGATCG AGCGCGGCAC CGAGGCGCTC GCCGCCCGCG CATCGGAAGC GACAGCAGCG
CTTGCCGGCA AGGCCAACGA GATCGATCAG ACGCTCTCCG GCAAGACCGC GCAGTTGCGC
GATGCATTGG CGAGCACGCA TGAGCAATTG CGCACGACTC TTGACGACCG GATCAGTGCG
ATTGACCTTT CAGTCGGCCA GGGCCGCGAG CGTTTGGAAG AAATCCTGTC CGATCAATCA
GTTGCAATGG CCACCACTCT GGCGACCAGC GCCAGCATGC TTGAAATGTC GCTCGAGGAG
CGCCAGGCAT CGATCGCCGG AGCGATCGAT CGCAGCGCCG AAGCGCTCGA CTCCCGGATG
CGCTCGACGA CGGGCGAGAT AGCGGAGCGA CTTGCCGAGA CAGCAGATCA GATCAGTCTC
GCGGCCGACT CCCTCACCAA TCGGGTCGAC ATTTCGATCA GCGGCGTGAA CAGCCGGCTT
GACGAGACCG GCGCTCGGAT CGAGACAAGC CTCGGATCGC TCGAGGAGCG TATTCGCTCC
AGCGTCGGCG ACGTCGATGC GGTGCTCGGC GACACCGGCG CCCGCATCGA GACGAGCCTC
GGCTCCCTTG AAGAGCGCAT TCGCGACAGC GTCGGCAGCG TCAATGCCAT TGTCGACAAT
GCCGGCCAGC GGATCGCCGA AAGTCTCGGT GAACGCGCGG GCGAGATCGA CAGGATCAGC
GAAACTGCGG CAACGCGGAT ATCGACGGCG ATCGAGGCCG GCGCAGGCCG GATAGAAGAA
CGTCTCGGCA CGATGGATCG CGCGCTCAAT ATCGGGTTGG AAAACGTCAA CCGCACGATC
GAAGGGAAGG CTGCCGCGCT CGTCACAAGC TTGCGCGGCG CCGTCAGCGA CGCCACTCAG
GAGATCGATG CGGAAGCCGC GCGTTCGGCC GGGCTGCTGT CCAAAGCGGG GGCTGACTTT
GCCGGCGCGC TCGCCGCGAG CAACGCCGAA TTTGCATCAT CGATCGAGCA AACCGCTTCT
GTAACGGCCG CGCGCCATGC TGAGATCGCC CGTTCGGTCA CCGAAGCAGC GGAAACCGCG
ACCGCCCGTC TCGCCTCTAC GAACAGTCAG ATCGCAAGCC ATGCCAAGAG CATCCAGCAG
AGCCTGACCG AAGCGGAGAA ATCCCTGGAT GCGCGCGGCC AGTCCATCCG CAGCACGCTG
GACGAAAGCA CCCGCGAGCT CAATTCGATG CTCGCCGGGC GCTCGATCGA ACTTTCGCGC
CTCCTCGACG AACAGGCTCG CCCCGTCATC GAACAATACG CTGCTACCGG CAAGGAGGCC
GCCGAGCGTA TTGCCACCCT CACCCAGGAA AGCGCCGACC GCTTGCGTGC CGAAAACGCC
GCGCTCATCA ACGCCATCAC CGAGCGTACC GGCGAGACGC TCGATGCCAT CTCGATGCGT
GCGGAAGAGA CCGCCAAGGC TATGAAGATG GTCGAGAACC GGCTGCAGTC GACCGCCATG
GGTCTGATCG ACCAGCTTGC GTCAAGCAAT TCGGCGATCG CGTCGGTGAT CGACCAGGCG
AGCGGCAATC TCGGCGATAT GGATCAGCGC CTCGAGGCGA CAGCCGCGAA GGTTTCGGAG
ACGGCACGCC AAGCCTCTGA CATGCTTTCC ACCTCGACCC GCCTGATCGA AGGCAAGGTC
GACAAGCTGT CGGACATTTC CTCCTCGACG CTATCGCAGA TCGGCGGCAT CGTCGGCCGC
TTCGAAGATC ATTCGAAGGT TCTCGGACAG GCATCCGACC TTCTGGCAGC CGCTCAGTCG
AATCTCGTCA GTACGCTCGA AGAACGCCAG GACGCGCTTC GCACGCTTTC GGTCGGTCTC
GTCCAGCGTT CGGAAGAGAT CGAGCGGACC ATGCGGGCTC TCGAGGGCTT CGTCGATGGG
GCCTTCCAGC GTGCCGAGGA GCGCTCCGGC CAGGTCGCCG GCAATCTGCG CAGCGGCATA
CAGTCCTCCT TCGCCGATGT GGGGCGGCTT CTTTCCAACA CCGAACAGCG GGCAACCGAG
GCCGCCGAAG CGCTTCGCGA CACGCTTGTC AAGGCAAGCG ATGAAGCCGC CGCTTCGGTC
GAGGGCGTCT TCACGCAAGC GGAGGAACGC TCACGGCAGA TCGCCGACAG GCTGCGCTCC
GGGGTCGAGA CCTCCTTCGC CGACGCGAAC AAGACGTTGT CGCAAGTCGA AGGCCGTGCA
CTCAGCGCCT CCGAGGCTCT GCGGCAGGTC GTGGCAAAGA CTGGCGAGGA AGCCGGACAG
GCGCTCGAAG GAGCGTTCGC CACCGTGGAG GAGCGTGCCA AGGACGCAGC TTCGCGGCTA
CGCGGCAGCA TCGGAGCCTC CGTCTCCGAC GTCGAGCGCA TGCTGACCGA GAGCGGCAAG
AAGTCCGATG GGGTCGCGGT ACAATTGCGG GAGGCCGTCC GCCAGGCGAT CGAAGACGCG
ATCGGCCGCT TCAATGGCGC TACCGACGAC ATCCGGCGCT CTGCGGGCGA GATCCGCAAG
GAACTCGATA TGACCCGCGA AGAGCTGAAG CGGGGCGCCT TCGACCTTCC GGAAGAAGCC
AAGGAGAACG CGGCACTGAT GCGCCGCGCC GTCGGCGAGC AGATCAAGGC GTTGCAGGAG
CTGTCCGAGA TCATCGGCAA GTCGTCCTCG CAACTCGAAA TCGCCCAACC CGTGCGCCAG
CAGGAGGCGC CTGTCGCCCC GGTTCGGCCG GCGCCGCAAG CCGCAGCGCC GCAGCCTCCG
GCGGCTCAGC CCGCACCGAA CGCGGCACTA CGCGGAAGTC TGGGCATTGA GCAGGCCACT
CGCCCGCTGC AGCCTGCCCG GCCGCCGGCA ACGGAGGAAC GCGCCGAAGA GGGCGGCGGC
TGGATGCGCG ATCTCCTACG CGCCGCTTCC CGCGAGGAAG AGCCTGCAGC TGCACGGCCG
CGGGCCACGG ACGGCCAGCC GGTTGCAAAG GCAGGGGACA GCCGTAACCC GCGCCACGTC
GTCGAGTCGC TGAACTCGCT CTCGGTAGAC ATTGCGCGCG CGATCGACCA CGACGCCTCT
GTCGATCTTT GGCGGCGCTA TCAGCGTGGC GAACGCGACG TCTTCACACG TCGCCTCTAT
ACGCTGAAGG GGCAGCAGAC CTTCGACGAG ATCAAGCGGA AGTACGATCG CGAACCGGAA
TTCCGCACCG CGGTCGACCG TTACATCGCC GACTTCGAGA AGCTGCTCGC CGATGTCGCC
CGCAACGATC CCGACAAGCG CATCACCCAG ACCTATCTGA CGTCCGATAC GGGCAAGGTC
TACACCATGC TTGCCCATGC AGCGGGGCGC TTCAGCTAA
|
|---|
| Protein sequence | MATKKTNESI DEKAFEALEA ALKIDFDDLK SALNDEVSPS EPEAKASEPG KQAAGSGEAR
AARPQQDSQT QPRGTEAPRS FASEMAPKQP PLAPANDDTR KSPAATLRSL EVRSSRAAIR
VAALVSLIWT AAALGVAHLL YAPEIWQIRS LGDLAAMPGV IGVLLGIALP VMLFFSFAIM
IARAQELRSA ARSMAEVAMR LAEPETNAAD RVMTVGQAVR REVSAMNEGI ERTIARATEL
EALVHSEVSA LERSYSDNEL RVRTLVQELG LEREAIIGHS ERIRTAIAGA HTKLKDDLET
ASEDIASRIA VSGEAFASLI DTRAAALTDK SDHALENLST MLSTRTDALL SGLTTAGVAL
SSEFDSRLDA LSENLTQRGE QLLSQFETRA STLDANTEKL NAALNERARQ LNETLIARTR
DLNESIRIGQ QAISGGLDDV LSSLNTALDE KGASFRQSLK SSADDAIMDL DLRGGFFEEK
LQTTVGHLAT AFDERFHEFA SAFDKRASQL DTKLMESLHR INETVSGGSE AIGGALDSSV
EKINSALSDQ SLTLATALGA TQDFIEETIG SRTNELSSLI GNAHNRIESV LSDKTGSLMG
ALTEAQDRIE NGFGKRADAL AEALTTSEQR LTDGLDSRTS AFIDGLQSAH ARIEQTLTGS
TDEITSAIAA SQHRLDNTLS ERTAALSGAL ASGASVIENA VGGTADRLER VLSERGRTIT
DVLSTQTTAL DEVLAERATQ INSTMSARAS EMADSLSRHA EDVADSLTFR AMAVAETMTD
RVGEIENKLS QSVSEVAENL GGRVSLIAGT LTDTSARIAE DLSSRVGRIS ETLAGTSAEI
AEALTARTSE ATASLAGKAA EIEQTLTGRA EHLRDTLTTT HDQIRSTLDD RIRAINVSVG
QGREQLEELL SDQSMAMATT LATSASMLEM SIEERQAAIA GAIERGTEAL AARASEATAA
LAGKANEIDQ TLSGKTAQLR DALASTHEQL RTTLDDRISA IDLSVGQGRE RLEEILSDQS
VAMATTLATS ASMLEMSLEE RQASIAGAID RSAEALDSRM RSTTGEIAER LAETADQISL
AADSLTNRVD ISISGVNSRL DETGARIETS LGSLEERIRS SVGDVDAVLG DTGARIETSL
GSLEERIRDS VGSVNAIVDN AGQRIAESLG ERAGEIDRIS ETAATRISTA IEAGAGRIEE
RLGTMDRALN IGLENVNRTI EGKAAALVTS LRGAVSDATQ EIDAEAARSA GLLSKAGADF
AGALAASNAE FASSIEQTAS VTAARHAEIA RSVTEAAETA TARLASTNSQ IASHAKSIQQ
SLTEAEKSLD ARGQSIRSTL DESTRELNSM LAGRSIELSR LLDEQARPVI EQYAATGKEA
AERIATLTQE SADRLRAENA ALINAITERT GETLDAISMR AEETAKAMKM VENRLQSTAM
GLIDQLASSN SAIASVIDQA SGNLGDMDQR LEATAAKVSE TARQASDMLS TSTRLIEGKV
DKLSDISSST LSQIGGIVGR FEDHSKVLGQ ASDLLAAAQS NLVSTLEERQ DALRTLSVGL
VQRSEEIERT MRALEGFVDG AFQRAEERSG QVAGNLRSGI QSSFADVGRL LSNTEQRATE
AAEALRDTLV KASDEAAASV EGVFTQAEER SRQIADRLRS GVETSFADAN KTLSQVEGRA
LSASEALRQV VAKTGEEAGQ ALEGAFATVE ERAKDAASRL RGSIGASVSD VERMLTESGK
KSDGVAVQLR EAVRQAIEDA IGRFNGATDD IRRSAGEIRK ELDMTREELK RGAFDLPEEA
KENAALMRRA VGEQIKALQE LSEIIGKSSS QLEIAQPVRQ QEAPVAPVRP APQAAAPQPP
AAQPAPNAAL RGSLGIEQAT RPLQPARPPA TEERAEEGGG WMRDLLRAAS REEEPAAARP
RATDGQPVAK AGDSRNPRHV VESLNSLSVD IARAIDHDAS VDLWRRYQRG ERDVFTRRLY
TLKGQQTFDE IKRKYDREPE FRTAVDRYIA DFEKLLADVA RNDPDKRITQ TYLTSDTGKV
YTMLAHAAGR FS
|
|---|
| |