| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1399 |
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| Symbol | |
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| ID | 5322250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1475152 |
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| End bp | 1478667 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640790341 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001327080 |
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| Protein GI | 150396613 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.779162 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.977146 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGA TACCTGGCCT CGACCCTAGG AAGGTTCTTG CGGCGACGCG GGAAATGACA
ATCGGCCCGG TGCCAACGGG TGCCGAGGCG CTCGTACTTG CGGAGCTGGC GCGTGGCGGC
GCACCCGTCG CCTATATTCT GTCTGACGGA CAGAAGGTCT CAGACCTCGA ACAGGTGCTC
GGCTTCGTCG CTCCCGACAT CCCGGTTCTG ACGCTGCCCG GTTGGGACTG TCTTCCCTAC
GACCGCGTCT CCCCGAGCGC CGATACGTCG GCCCGGCGCC TGGCGGCCCT GAGCGCGCTG
ATTGCCCATC GACGGAAACC GCATCCGGCG ATCGTGCTCG TCACCGTCAA TGCGGTCCTG
CAAAGGATCT CGCCGCAGGA TGTGATCGAA AGCCTCGCCT TCACTGCTCG TCCCGGCAAT
CAGATCCGCA TGGACGACCT TGCGGCCCGG CTCGAGCGAA ACGGTTTCGA GCGGGTGCCG
ACGGTGCGCG AGATGGGCGA ATTTGCCGTG CGAGGAGGCA TCCTCGACGT CTATGTACCC
GGCAGCGGCG AGCCTCTGCG CCTTGACTTC TTCGGCGACA CGCTCGAGGC GATCCGCGCA
TTCGACCCGG CAAGCCAGCG CACGATCGGG CAGGTTCGAT CCCTGGACCT CAATCCGATG
AGCGAGGTGT CGCTGACGCC GGAAACGATA AGCCACTTCC GAAAGCAGTA TCTTTCGCTC
TTCGGAGCGG CGACGCGCGA TGATGCGCTC TATCAGGCGG TGTCGGAGGG CCGGCGTTAT
GCGGGCATGG AGCATTGGCT GCCCCTCTTT TATGATCGGC TCGAAACCGT CTTCGACTAT
CTGAACGGTT TTCGCATCGT CACCGATCAT CTGGCGCGAG AGGCCGCCGC GGAGCGCTCG
AAGCTCATTC TCGACTATTA CGACGCGCGT CTTGCCTCCG CTTCACCGGG CAAGTCCCAG
GCCACGCAGG GCACGCCTTA CAAGCCAGTG CCGCCGGACA TGCTCTATCT CGCCGCGAAA
GCGTTCGGGG ATGCGCTGAC GGAGCGCAAT GCCGTCCGCC TGTCACCTTT CTCCGAACAC
GAGGGCGAAG CCCGACACGT TGTGCATATC GAAGCGCGCC AGGGTGTGCG TTGGGCCAAG
TCCGCGAGCG AGGCCGAAAG TGACGGCACG CGCACCAACG TCTTCGATCA GGCAGTGAAG
CATATCGCCG AAAAGCGCGC CAAAGGCGCC AGGGTCCTCG TATCCGGTTG GACGGAAGGT
TCGCTCGACC GGCTGCTTCA GGTTCTAGGC GAGCATGGCC TGGCCAATAT CCGCCCGGTC
CAGGCGCTTT CGGACCTCAA TTCGCTGAGG CCGGGTGAAG CGGCATCCAC CGTTCTTAGC
CTCGAAGCGG GTTTTGAAAG CGGCGACCTT GTCGTCATAG GCGAGCAGGA CATTCTCGGA
GACCGTCTGG TTCGCCGCTC CAAGCGCCGC AAGCGGGGCT CTGATTTCAT TGCCGAAGTG
ACCGGCCTGG ATGAGGGCAG CTACGTCGTT CACGCCGAGC ACGGGATCGG GCGCTTTGTC
GGCCTGCAGA CAATCGAAGC CGCCGGTGCG CCGCATGACT GCCTCGAACT CGTCTATGCG
GACGACGCCA AGCTCTTTTT GCCGGTGGAA AACATCGAGC TTCTGTCCCG CTACGGTTCG
GAAGGAACCG ACGCGGTTCT GGACAAGCTT GGCGGGGTCG CCTGGCAGGC GCGCAAGGCC
AAGCTCAAGA AGCGCCTGCT GGACATGGCC GGGGGGCTCA TTCGCATTGC GGCCGAAAGA
CACACGCGCC ATGCGCCGGT CCTGGCGGCG CAGGATGGCG TCTACGACGA ATTCGCAGCA
CGCTTCCCCT ATGACGAGAC CGAGGACCAG CTGAACTCGA TCGATGCCGT TCGCGACGAT
CTCGGCAGCG GCAGGCCGAT GGATCGCCTC GTATGCGGAG ATGTCGGCTT CGGGAAGACG
GAGGTGGCGC TGCGTGCCGC TTTCATCGCG GCGATGAACG GCGTGCAGGT GGCTGTGGTC
GTACCCACGA CACTGCTTGC GCGGCAGCAC TTCAGGACCT TCTCCGAACG TTTCCGCGGT
CTGCCGATAC GGATTCAGCA AGCCTCCCGG CTCGTCGGCT CGAAGGAGCT GGCGCTCACC
AAGAAGGAAG TTGCGGAAGG CAAGACGGAC ATCGTGGTCG GCACGCATGC ATTGCTCGGC
TCGTCGATCA AATTCGCCAA TCTCGGCCTG CTGATCATCG ACGAGGAGCA GCACTTCGGC
GTGAAGCACA AGGAACGCCT GAAAGAGCTG AAGACCGATG TGCATGTTCT CACGCTCTCG
GCGACGCCCA TTCCGCGGAC ACTGCAGCTT GCCCTTACCG GCGTGCGTGA ATTGTCGCTG
ATCACCACGC CGCCCGTCGA TCGCATGGCG GTGCGGACCT TCATTTCGCC CTTCGACGCG
CTGGTGATCC GAGAGACGCT GATGCGTGAG CACTATCGCG GGGGCCAGAG CTTCTATGTC
TGTCCACGTG TAAGCGATCT TCCGGAGATT CACGATTTCC TGAAGTCCGA CGTGCCGGAA
CTGAAGGTGG CCGTGGCGCA TGGGCAAATG CCAGCAACCG AACTCGAAGA CATCATGAAC
GCCTTCTACG AAGGTCGCTA CGATGTCCTG CTCTCGACCA CGATCGTCGA GTCCGGTCTC
GACGTACCGA CCGCCAATAC CCTGATCGTG CATCGTGCGG ACATGTTCGG TCTGGCCCAG
CTCTATCAGC TGCGCGGCCG CGTAGGGCGC TCCAAGGTCC GCGCCTTCTC GCTCTTTACG
CTTCCGGTAA ACAAGACCCT GACCGGACCT GCGGAGCGGC GCCTCAAGGT CCTGCAGTCG
CTTGATACGC TCGGAGCCGG GTTCCAGCTC GCCAGCCACG ATCTCGATAT CCGCGGCGCC
GGCAACCTGC TGGGCGAGGA ACAGTCGGGT CATATCAAGG AGGTCGGTTT TGAGCTCTAC
CAGCAGATGC TGGAGGAAGC GGTGGCCGAA CTCAAGGGCG AGGAGGAGAT CCGCGATACC
GGCTGGTCGC CGCAGATATC GGTCGGCACA CCGGTGATGA TCCCCGAAGA CTATGTGCCC
GACCTCAACC TGCGGCTCGC GCTCTATCGG CGTCTGGGCG AGCTGACGGA TCTCAAGGAG
ATCGACGGCT TCGGTGCGGA ACTGATCGAC CGTTTCGGGC CGCTTCCAAC GGAGGTGCAG
CACCTCCTCA AGATCGTCTA CGTCAAGTCG CTCTGCCGCA CCGCGAATGT CGAAAAACTC
GATGCCGGGC CTAAGGGCGT CGTGGTGCAG TTCCGCAACA AGGAGTTCCC CAACGCGGCC
GCTCTCGTCG GTTACATCGC CAAGCAGGGG ACGATCGCCA AAATCCGCCC GGACCAGAGC
ATCTTCTTCC AGCGCGATCT TGCCACACCG GAAAAACGGC TCTCCGGTGC CGCAATGGTC
ATGACGCAGC TCGCAGCGCT CGCAAAAGCC GCATAG
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| Protein sequence | MTMIPGLDPR KVLAATREMT IGPVPTGAEA LVLAELARGG APVAYILSDG QKVSDLEQVL
GFVAPDIPVL TLPGWDCLPY DRVSPSADTS ARRLAALSAL IAHRRKPHPA IVLVTVNAVL
QRISPQDVIE SLAFTARPGN QIRMDDLAAR LERNGFERVP TVREMGEFAV RGGILDVYVP
GSGEPLRLDF FGDTLEAIRA FDPASQRTIG QVRSLDLNPM SEVSLTPETI SHFRKQYLSL
FGAATRDDAL YQAVSEGRRY AGMEHWLPLF YDRLETVFDY LNGFRIVTDH LAREAAAERS
KLILDYYDAR LASASPGKSQ ATQGTPYKPV PPDMLYLAAK AFGDALTERN AVRLSPFSEH
EGEARHVVHI EARQGVRWAK SASEAESDGT RTNVFDQAVK HIAEKRAKGA RVLVSGWTEG
SLDRLLQVLG EHGLANIRPV QALSDLNSLR PGEAASTVLS LEAGFESGDL VVIGEQDILG
DRLVRRSKRR KRGSDFIAEV TGLDEGSYVV HAEHGIGRFV GLQTIEAAGA PHDCLELVYA
DDAKLFLPVE NIELLSRYGS EGTDAVLDKL GGVAWQARKA KLKKRLLDMA GGLIRIAAER
HTRHAPVLAA QDGVYDEFAA RFPYDETEDQ LNSIDAVRDD LGSGRPMDRL VCGDVGFGKT
EVALRAAFIA AMNGVQVAVV VPTTLLARQH FRTFSERFRG LPIRIQQASR LVGSKELALT
KKEVAEGKTD IVVGTHALLG SSIKFANLGL LIIDEEQHFG VKHKERLKEL KTDVHVLTLS
ATPIPRTLQL ALTGVRELSL ITTPPVDRMA VRTFISPFDA LVIRETLMRE HYRGGQSFYV
CPRVSDLPEI HDFLKSDVPE LKVAVAHGQM PATELEDIMN AFYEGRYDVL LSTTIVESGL
DVPTANTLIV HRADMFGLAQ LYQLRGRVGR SKVRAFSLFT LPVNKTLTGP AERRLKVLQS
LDTLGAGFQL ASHDLDIRGA GNLLGEEQSG HIKEVGFELY QQMLEEAVAE LKGEEEIRDT
GWSPQISVGT PVMIPEDYVP DLNLRLALYR RLGELTDLKE IDGFGAELID RFGPLPTEVQ
HLLKIVYVKS LCRTANVEKL DAGPKGVVVQ FRNKEFPNAA ALVGYIAKQG TIAKIRPDQS
IFFQRDLATP EKRLSGAAMV MTQLAALAKA A
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