Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1279 |
Symbol | |
ID | 5322126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1373424 |
End bp | 1374722 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640790220 |
Product | type III effector Hrp-dependent outers |
Protein accession | YP_001326964 |
Protein GI | 150396497 |
COG category | [S] Function unknown |
COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.11969 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.613819 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAGC CTCTGCTGAC CTATTATGGC GACGACCTCA CTGGTTCCAC GGACGTGATG GAGGCGCTCG CCACGCGCGG CTGCCCGACC GTGCTTTTCA CCGACATTCC AGGTGAAGAA TTAGCGGCGC GCTTCTCCGA CCGGCAGGCG ATTGGGATCG CAGGAACCAG CCGCAGCGAA ACGCCCGAAT GGATGGACAG GAACCTGCCG CCTGTCTTCG AGTGGATGAA GCAGTCAGGG TCCGTCCTTT GCCATTACAA GGTTTGCTCG ACGTTCGATT CCAGTCCCAA AGCCGGAAGC ATCGGCCGCG CTCTCGATAT CGGCGCGGCG GTCTTCGATC AGGCTTCGAC CCTTCTGGTC GTCGGCGCGC CGGAGTTGAA GCGCTATACG GCCTTCGGAC ATCTGTTTGC GCATTTCGGG CCGGACATCT TCCGGATCGA CCGGCATCCC GTCATGGCCC GCCATCCGGT GACGCCGGCG GACGAGGCTG ACCTGCGGCA GCACCTGATG CGCCAGACGA GGAAAACGGT AGGACTCGTC GATTTCGTGC AGTTGAAGAG CCAAACCGCA ATCGAAGAGC TGAAAGCCGT TGCAGTGCGG AATCCCGTGG CGCTCGTAGA TGTGCTGGAC GAAGAGAGCA AGGTCCGGGC CGGACAACTC ATCTGGGCCT CGCGCGACGT TTCGCCGTTC ATCGTCGGCT CCTCGGGAGT GGAATATGCG CTCGTGGCGG AAGCGGCCGG AACGCCGCTT GCGGGAGTGC CCCGCAATAT TTCTCCGCCG GGAAGCCGTG GACCGATCGC GGTTGTTTCA GGCAGTTGCT CGCCTACCAC CGAACGGCAG ATCCGCCATG CGATGCAAAA CGGCTTCGAA GGCATTCACG TCGACCCCCG CAGCCTGGTT GAAGACCAGG AATCGACCGT CGCGAATGCG CTGGTGACCG CGGGTGATGT GCTCGCCAGC GGGAAAAGCC CGCTGTTCTA CACGGCGATC GGCCAGGCGG ATTACGGCGG CGCGGCGGAA AGCGGCCATG CCATCGGCTC AGGGCTCGGT CGAATCCTTG CCGAGATTGT CGGGCGCCAT GGCTTGCGCC GCGCGGTGGT TGCCGGCGGC GATACCTCCA GTCACGCGAT TCGGCGGCTG GCAATCCAGG CGCTGGAGCT GCTGGTTCCG CTGCCTGGCT GTCCCGGATC ACCGCTTTGT ACGGCTTCCA CGGAGGCCGG CACCAGGACA CTCGAAATCG CGTTCAAGGG CGGTCAGGTA GGCACGGATG CCTATTTCAC GATCGTTCGA GACATCTGA
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Protein sequence | MSKPLLTYYG DDLTGSTDVM EALATRGCPT VLFTDIPGEE LAARFSDRQA IGIAGTSRSE TPEWMDRNLP PVFEWMKQSG SVLCHYKVCS TFDSSPKAGS IGRALDIGAA VFDQASTLLV VGAPELKRYT AFGHLFAHFG PDIFRIDRHP VMARHPVTPA DEADLRQHLM RQTRKTVGLV DFVQLKSQTA IEELKAVAVR NPVALVDVLD EESKVRAGQL IWASRDVSPF IVGSSGVEYA LVAEAAGTPL AGVPRNISPP GSRGPIAVVS GSCSPTTERQ IRHAMQNGFE GIHVDPRSLV EDQESTVANA LVTAGDVLAS GKSPLFYTAI GQADYGGAAE SGHAIGSGLG RILAEIVGRH GLRRAVVAGG DTSSHAIRRL AIQALELLVP LPGCPGSPLC TASTEAGTRT LEIAFKGGQV GTDAYFTIVR DI
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