| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0432 |
|---|
| Symbol | |
|---|
| ID | 5321266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 467665 |
|---|
| End bp | 469209 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640789367 |
|---|
| Product | trimethylamine methyltransferase |
|---|
| Protein accession | YP_001326124 |
|---|
| Protein GI | 150395657 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG5598] Trimethylamine:corrinoid methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.57949 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGG CTGAAGCAAC CGGTGAGGCG CCGAGACGAA CCCGGAGCGG GCGACCGCAG
CGGCGCGAAG GCACCAAGAA ACTCGGTGTC CCCTACATCG TCCGCAATAT ACCGGCCTAT
GACATCCTCG GCGAAGAAAA TCTGGAGCGG ATCGAGCGGG TCGCCGACCG AATTCTTGCC
GAAGTCGGCA TCGAGTTTCG CGACGATCCG GTAGCACTCG AGCACTGGCG GGGTGCCGGT
GCGAAAATAG ACGGTCTGCG CGTCACCTTC GAACCCGGCA TGCTGAAGGA GATCGTCCGC
TCGGCGCCGT CCCAATTCAC GCAGCACGCC CGCAATCCGG CGCGCAGCGT CGAGATCGGC
GGCCGAAACG TCGTATTCTC ACCGGCTTAC GGCTCACCCT TCGTCATGGA TCTGGATAAA
GGCAGGCGCT ACGGCACCAT CGAGGATTTC CGCAATCTGG TGAAGCTCGC CCAGTCGAGC
CCATGGCTGC ACCACTCCGG CGGCACCATC TGCGAACCGG TCGACGTGCC GGTAAACAAG
CGCCATCTCG ATATGGTCTA CAGCCACGTC AGATATTCGG ACCGTGCCTT CATGGGCTCG
ATCACCTCGG AAGAACGAGC CGAAGATTCG ATCGAAATGG CGCGCATCCT TTTCGGTGCC
GATTTCGTGG ACAGGAACTG CGTCATACTC GGTAACGTCA ACGTCAACTC GCCGCTCGTC
TGGGACGGCA CCATGACGAA GTCGCTGCGT GCCTATGCTC GTGCGAACCA GGCTGCGGTG
ATCGTACCGT TCATCCTCGG CGGAGCGATG GGCCCGGTAA CCAATGCGGG GGCGATTGCA
CAATCCTATG CCGAAACGCT TGCCGGCTGC GCGCTGACGC AGCTCGAACG CAAGGGTGCG
CCCGTCATAT TCGGGAATTT TCTATCCTCC ATGTCGCTCC GCTCCGGCTC GCCAACCTTC
GGTACGCCGG AGCCGGCGAT CGGCAGCATG GTCGTCGGAC AGCTCGCGCG CCGGCTCGGT
CTGCCGTTGC GCTGCGCCGG CAATTTCTCC AACTCGAAAC GGCCCGATGC TCAGGCCATG
CAGGAAGGGG TCATGTCGAT GCTGTCGGCG GTCCATTGCG GCGCCAATTT CGTCCTGCAT
TCGGCCGGCT TCGCCGACGG CCTGCTGGCG ATGTCCTATG AGAAATTCAT GATGGATATG
GATTTCTGCG GGGCGCTGCA TTCCTACCTT GCTGGGGTGG TGATCGACGA CAATACGCTC
GCCATGGACG CTTTCCTGGA GGTCGGCCCC GGCAGCCACT TCCTTGGCTG CGAGCACACG
ATGCGCAATT ACCAGACTGC GTTCTGGGAC AGTTCCCTTT CCGACAACGA GCCCTTCGAG
AAATGGGTCG AGCAGGGCGA GACGGACATG GCGCTTCGCG CCAACAGAAG CTGGAAGAAG
GCACTGGCGG AATATGAAGC GCCGCCTCTG GATATGGCGA TCGACGATGC GTTGATTGAC
TATGTTGAAA GACGGAAGGG CGAAATGCCC GATGCGTGGT ACTAG
|
|---|
| Protein sequence | MELAEATGEA PRRTRSGRPQ RREGTKKLGV PYIVRNIPAY DILGEENLER IERVADRILA
EVGIEFRDDP VALEHWRGAG AKIDGLRVTF EPGMLKEIVR SAPSQFTQHA RNPARSVEIG
GRNVVFSPAY GSPFVMDLDK GRRYGTIEDF RNLVKLAQSS PWLHHSGGTI CEPVDVPVNK
RHLDMVYSHV RYSDRAFMGS ITSEERAEDS IEMARILFGA DFVDRNCVIL GNVNVNSPLV
WDGTMTKSLR AYARANQAAV IVPFILGGAM GPVTNAGAIA QSYAETLAGC ALTQLERKGA
PVIFGNFLSS MSLRSGSPTF GTPEPAIGSM VVGQLARRLG LPLRCAGNFS NSKRPDAQAM
QEGVMSMLSA VHCGANFVLH SAGFADGLLA MSYEKFMMDM DFCGALHSYL AGVVIDDNTL
AMDAFLEVGP GSHFLGCEHT MRNYQTAFWD SSLSDNEPFE KWVEQGETDM ALRANRSWKK
ALAEYEAPPL DMAIDDALID YVERRKGEMP DAWY
|
|---|
| |