Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0394 |
Symbol | |
ID | 5321228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 422685 |
End bp | 424124 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640789329 |
Product | D-lactate dehydrogenase (cytochrome) |
Protein accession | YP_001326086 |
Protein GI | 150395619 |
COG category | [C] Energy production and conversion |
COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0534989 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.413776 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGAGA CGATAGGCTT TCTGAAGCCC AGGCAGGCTG TTCTCGATCG TCGGCGGGAA ATCGTCGCCG ACCTCGGTGA TCTGCTTCCG GAAGGTTGCC TCATCAGCGA CGAACGTGGC CTCAAGCCAT TCGAGACGGA TGCATTTATC GCCTACCGGC GGATGCCGCT CGCGGTCGTT CTCCCCGAGA CGACGGAACA GGTGGCCACG GTCCTCAAAT ACTGTAGCCG CTACGGTATT CCAATTGTCC CGAGGGGTGC CGGCACCTCC CTCTCCGGCG GGGCCATTCC TCAGGAAGAC GCGATCGTCG TCGGCCTGTC GAAGATGGCG CGCATCCTCG ATATCGACCT CTTCAACCGG ACGGCGACGG TTCAGGCGGG CGTGACCAAT CTCAACATTT CCGACGCGGT TTCGGCCGAT GGATTCTTCT ATGCGCCGGA TCCGAGTTCG CAGCTCGCCT GCACCATCGG CGGGAATATC GGGATGAATT CCGGTGGCGC GCACTGTCTG AAATACGGGG TGACCACAAA CAACCTTCTT GGCGTCAAGA TGGTGCTTTT CGACGGCACC GTGATCGAAC TTGGTGGCAA GGCGCTCGAC GCCTCGGGAT ATGACTTGCT TGGCCTTATC TGTGGTTCCG AGGGGCAGCT TGGTATCGTT ACGGAAGCGA CGGTGCGGCT GATTGCCAAG GCCGAAGGCG CGCGCCCCGT TCTTTTCGGA TTTGCCACTT CAGAATCCGC CGGGAGCTGC GTCGCCGATA TCATCGGATC GGGCATCATT CCGGTTGCGA TCGAATTCAT GGACAAACCG GCAATCGAAA TCTGCGAAGC CTTCGCGCAT GCGGGGTACC CGCTCGACGT CGAAGCATTG CTGATCGTCG AAGTGGAAGG TTCCGAGGCT GAAATGGATT CGATGCTCGC AGGCATCATC GGGATTGCCC GCCGCCACGG TGTGATGACG ATCAAGGAAT CGCAATCGGC GCTCGAAGCG GCACTGATCT GGAAGGGGCG GAAATCGGCC TTCGGCGCTA CCGGCCGGAT TGCCGATTAT ATCTGCATGG ACGGAACGGT GCCGCTGAGC CAGCTCTCCC ATGTCCTGCG CCGGACCGGC GAGATCGTCG CCGGCTATGG CCTGCGCGTT GCCAATGTCT TCCATGCAGG TGACGGCAAC ATGCATCCGC TGATCCTCTA CAATATCAAC GATCCGGATG AAGCGGCCCG GGCGGAAGAG GCGGGCAACG ACATTCTGAA GCTCTGCGTC GAGGCAGGCG GCTGCCTCAC CGGGGAACAC GGGGTCGGCA TCGAGAAACG TGACCTGATG CTGTTTCAGT ACAGCAAGGC CGATCTCGAC CAGCAGATGG GCGCGCGTGC TGCCTTCGAT CCGCAATGGC TCCTGAACCC GTCGAAGGTC TTCCCGCTCG AAGGGCGGCC CGCGGCATGA
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Protein sequence | MPETIGFLKP RQAVLDRRRE IVADLGDLLP EGCLISDERG LKPFETDAFI AYRRMPLAVV LPETTEQVAT VLKYCSRYGI PIVPRGAGTS LSGGAIPQED AIVVGLSKMA RILDIDLFNR TATVQAGVTN LNISDAVSAD GFFYAPDPSS QLACTIGGNI GMNSGGAHCL KYGVTTNNLL GVKMVLFDGT VIELGGKALD ASGYDLLGLI CGSEGQLGIV TEATVRLIAK AEGARPVLFG FATSESAGSC VADIIGSGII PVAIEFMDKP AIEICEAFAH AGYPLDVEAL LIVEVEGSEA EMDSMLAGII GIARRHGVMT IKESQSALEA ALIWKGRKSA FGATGRIADY ICMDGTVPLS QLSHVLRRTG EIVAGYGLRV ANVFHAGDGN MHPLILYNIN DPDEAARAEE AGNDILKLCV EAGGCLTGEH GVGIEKRDLM LFQYSKADLD QQMGARAAFD PQWLLNPSKV FPLEGRPAA
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