Gene Smed_0197 details

Gene Information

• Locus tag: Smed_0197
• ID: 5321027
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: -
• Start bp: 217291
• End bp: 224793
• Gene Length: 7503 bp
• Protein Length: 2500 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640789130
• Product: Beta-ketoacyl synthase
• Protein accession: YP_001325891
• Protein GI: 150395424
• COG category: [C] Energy production and conversion; [I] Lipid transport and metabolism; [Q] Secondary metabolites biosynthesis, transport and catabolism; [R] General function prediction only
• COG ID: [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases; [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); [COG3321] Polyketide synthase modules and related proteins

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 27
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGGTTG AAATCATAGG GCGTGCATGC CTTGCACCCG GAGCGAAATC TCCGCAGGCG 
CTGTTCAAAA TTCTTCGTCA GGGCAAATGC ACCGTGACAC GCGTCCCTGC GGACCGCTGG 
GATATGGCGC GATTCTGGCA CCCGGTCATG GGCACCCCAG GCAAGACCTA TTCCTTTGCC 
GCGGGCGTTC TCGACCAGAT CTATGATTTC GACCCCGCCG TATTCGGGAT GTCGCAGCGC 
GAGGCCATGT ATATGGACCC GCAGCAGCGG GTTCTGTTGC AGCTCGCCTG GCGCGCGCTC 
GAGGACGCCA ATATCTCCGT CGCCTCGCTG CACGGTGAAA ATGTCGGCGT CTATGTCGGC 
GCCTCCAGCC TCGACCACGC CAACCTGACG GTCGACGATC CGGCAGCCGC CGGACCTTAT 
TTCATGACGG GGAACACCCT GTCGATCGTC TCCAACCGTA TTTCCCACGT CTTCGGCCTG 
AGCGGTCCGA GCATGACCGT CGACACGGCC TGTTCCTCTT CGCTCGTGGC GCTTGATCAG 
GCGATGCGGG CGCTGAACGC GGGCGAGATC GACACGGCGA TCGTCGGCGG TATCAATGTC 
CTTGCCCACC CGCTACCCTT CGTCGGCTTC GCTCAGGCGC GCATGCTCTC GCCCGAAGGA 
CTCTGCCGCG CCTATGACAA CGACGGCGCC GGCTATGTGC GCGCCGAAGG CGGCGTCGTT 
TTCGTTCTGC GCCGCACCGA CAGGGCGCAG CGCGAACGTG ACCGCAGCTA CGCACGGATC 
GTTGCCTCGG GCGTCAATTC GGCCGGCCGC ACAAACGGCA TTTCGCTGCC CTCCCGCGAG 
GCGCAGGCCA ATCTTCTGAA GATGATCTAC GAAGGCAACG GCATCGACGC CAATCAGGTC 
GCCTTCGTGG AGGGCCATGG TACCGGCACC AAGGTGGGGG ACCCGGCGGA GGTATGGTCC 
ATCGGTACGG TGATCGGCGC CAAGCGCCGG GCTCCGGTGC CGATCGGCTC GATAAAGTCG 
AATATCGGCC ACACCGAGCC GGCCTCCGGC CTGTTCGGGA TGATGAAGGC GGTTCTGGCC 
CTCGAGAACA ACTACCTGCC GGCCTCGCTG CATTTCGAGA CACCGAACGA GCAGATCGAC 
TTCGATGGCC TCAATGTCCG CGTGACCGCC AACCCGATCG AGCTTCTGAA GGGCAAGCGG 
GCACGGCTCG CCGGCATCAA TTCCTTCGGT TTCGGCGGCG CCAATGCCCA TGTCGTCATC 
AGCGATCCGG ATCCGGCTCA GGGAGAAAAG GCCACGACCT CGCCGGCGGG CCACGTGTTC 
CTCGCAAGCG CCCACACAGT ATCGAGCCTC GAAAACCTGC TCAGAGACTA TAAAGCCGCC 
TTCGCGCACG CGAACAAGGA GGAGATGCGG GCCATCGTCG CCGCCTCCGG CGCCAATCGG 
ACGCATTTGC GCCATCGGTT TGCGGTCCGC AGCGACCATC CCGAGGATAT CGTCCGGGCG 
ATTGCCAACC ACCTCGAAAA GCCCGGATCC GATATCGGCG AGACGGGTGA AGCGGCGGCG 
AAGGACGCAA AGGTCGCCTT CGTCTTTTCA GGCAACGGCT CGCAATGGGC AGGCATGGGC 
ATCGAGGCGT TCCGCGAGAA CCTGCATTTC CGTCAATCGT TCACCTCGGT CAGCGCCCTC 
TTCCGGTTCC ATTCGGATGT CGTCCTCACC GACCTTCTGA CCGACCCCGA ACTCGACGGG 
AAGCTCGCGG ATACGAAAGT CGCCCAACCA CTGCTGTTCG CGATCCAGGC CGCGCTCTCC 
GACTCGCTCG TGGCGATGGG CATCAAGCCG ACGGCCGTGT TCGGTCACTC GGTTGGCGAG 
ATCGCGGCTG CCTATGCGGC GGGGGCGCTG TCGCTCGTCG ACGCAGTGTC GATCGTCGCC 
AAGCGATCGC TGCACCAGGA CCTTCTGGCA GGCCAGGGCA CGATGGCCGC CGTGATGTTC 
GGCGCAGAGG CAGCCAAGGC CTTTGCGGCG GAGCGCGGGC TCGAGGATAT CTGCGTCGCA 
GCGATCAACG CCCATAATTC GGTAACGATT TCCGGTCCGG CGGACGAGAT CTCGGCTTAC 
CGGGACGCGG CCCGCAAGGC GAAAATCCCG GTTCAAATCC TCGACATCAA CTATCCGTTC 
CACCATCCGA TCATCGATCG GGCGAAAGAG GCGTTCCTCT CCGACATCCC GGACATCGCC 
CCCCGCCGGA CAGAACTGAC CTATCTCTCG ACCGTCACCG GTGCCGCGCT CGACGGGACC 
GAGCTCGATC CCGACTACTG GTGGAAGAAC GTTCGCGAGC CGGTCCGTTT CCAGGCCGCC 
GCCGAGGCCG CGCTCGAACT CGGCTGCAGG CTGTTCATCG AGATCTCGCC GCGACCGATC 
CTCGGATCCT ACGTCAAGGA GACGATCAAG CAGGCGGCCG TGCCGGCATT GGTCGTACCG 
ACATTGCTGC GCGACGCCGG CGGCAGCGGC CACGACCCGA TTTCGGCATC CATGGCGCGC 
GCCGTCGCTC ATGGCGCCGC CGTCGACCGG TCACGCGTCT ACGGCAAGCG GAATGCATTC 
GTCGAACTGC CCGCCCTGCC CTTCGAGCCC GTGGAACTGC GACCGGCCAC CACGACCGAT 
GCAACGGATC TCTTCGGACG CTCCGCAAAG CCCTACCGCC TCAACGGCTG GCGTGGCGAC 
CCCAATGCGG GCAGCTGGAA GAACCACGTC GACGCGCATC TGTTTCCGGA TCTCGCCGAA 
CACGTGGTCG ATGGCAAGGC CATTCTGCCG GGCAGCGGTT TCATCGAAAT CGCCGTCTCC 
GCCGCACAGC AATATCACGG CAGCGACGAG GTCGAGATCA CCAATCTGGA GATCGTTCGC 
CCGCTGGAAC TCAGCGACAG CCGTATCATG GAGCTCTCGA CCATCCTGTC GCCCGAGACC 
GGAGACATAG AAATCCGCTC GCGCGAGCGC CTCTCGGAAG ACGATTGGAC CGTGCATGCC 
GTCGCCCGAA GCCGCAAACC TCTGCCGGCG ACGCGCAACG AGTGTCCGTC CACCAAGGGT 
CTGGCGAGGA CGGCGAGCGT TTCTGCAGCC AAAGCCTATG GAACCGCGAA GCAATTCGGT 
CTGGACTACG GACCGCGTTT CCAGCTTCTC TCCAAAGCGG TCGCCTATGG AGACCGGCTC 
ATCGAGGTCG AGCTGAAGCA ACCTCAGGCA TCGGGGCACC CCCACCTCAC CTATGCGCTT 
CATCCGATCT CGGTCGATGC GACCTTTCAC GGACTGGTCG CGCTCTTCGA CCGCTTCACC 
GGCGACAGGG GCGGCGCGCC CTACATTCCT GTCCGCTTCG GCTCGGTACG CGTCGTCAAT 
GCCGGCCGGC GGATCGCCCG CGCGATGATC GAGATAGAGA GGGTCAGCGC CAATTCGATC 
AAGGCGAAGT TCCATTTCTT CGACGAGACC GGCGCCGCGA TCGCGCATTT CGAGGATTGC 
CGCTTCCGCC GTACCTATCT GCGCAAGCAC AAGACGCTGG AAGGTCTTTC CTTCCACTAT 
GAAGCCGTGC TTTCCGACGT GCTCGTGCCC GGCATGAAAC GCGCAGCCGC CATGCCTGCG 
AAGCTGGTTG AGCCAATCGA CAACGATGGC CTCGACAATG CGACCCTGCT CTTCAACGCC 
GCCATATATC GCGCCTGTCA GGAGATCGCC CTGAAGCTCG GCAAGGGGAC AGCCACGGTT 
CGCAGTGACG CGCTGCCCGG GGACCTCGAT TTCCAATGCT TCCTGACGAG CTGCCTCCTG 
ACGCTCGAGG ATGCGGGACT CTGCGAGCAC CAGAACGGCA CCTGGAAGGT CGCCCCCGAG 
TTCATGCTTC CGACCGTGCC GGAGATCCTT GGCGAACTTT ACGGCGATCG CCCCGATCGT 
GCCGTAGAAG CGGTCCTCGT CAACAACGCC TATACGGAAG CACTCAGCCG TCTCGATGCG 
CTGCTTGCGC CGGCACCGGC CGGTGACGCG TCGGCTTCTT TCAATGCCGC TTTCATGAGC 
GAAGCGACGC TCGACCATCA GGCCGTGCAT TCCGCGGCGA GCCGATCGCG CATGGACCAC 
GTTCTTCATA CGCTTGCAGG CGCTCTCGCT GCCCAACCTG CCGGGTCCCG TCTGCGGCTT 
ATCGAACTCG GCAGCGTCTC TGCCGGCTTC AGCCGCCGGT TGGCCGATCT CGCGGCCCGC 
CATGGTGCGG CGCTTTCCAT TTTCGAGCCG CGCGACAATG CACAGCGCAA CCTCGAAATC 
GCCTTCGAGG AGGATGCGCA TGTGCGCGTG CTCAAGAAGA GCGAATTCGC CGATATCGGC 
TCGTTCGACC TCGCCGTCAG CGCTTCGGAT AATCTCTACC ATCTGATCGA AGAGGGGAGC 
GGGGTGCGAT CGGCCCTTCG CTCCATGCTT CCCGGAAGCG GCCTCATTGC GGCCGTCAGT 
GCCCCTTCCA TCTTCGCCGA CTTCGCCCTG GGTCTCTCGG GCGGATGGTT CGAGCGCAGC 
CAGGCGGCGG AGTTCCCTAT CGGCAAGATC GCGGCGGTAC CGCATTGGCA GAAATGCCTT 
GAAGACCTGG ACCTTGGCGA CGTTGTCGTG ACGGATCGCG AATGCCCTCA TGGCAGCACC 
ATCCTGATCG AAGCCCGCGG CACAGCAGCC GCAAGCGTCG GTGAAGTGCC GGGCGGCGGC 
GCGGCGCCAT ATCTGCTGAT AGAGCCCGCA ACGCAGAAGA TTTTGGCCGC CGGTAAGGGG 
GCTAACCACG TCCGTGTGAC CGGCGACATT GCCGCAGATC TTGCGACCCT GCGCGACGCC 
CTTGCAGCCC TTGGCGACAG GCCGGTCCGC GCGATCTTCA TGTCCGAGGC GGACCGCGCC 
GCAGATGAGG ATTCTGCCCT GCTGCAGTCC CGCGTGCTGG CGCTCAGCGC CTTCGCCGAG 
GCACTGAAAC AGCACCTGGC CGGTGCAGAA CCCGATGGCG ACGACCGGCC GCGCCTCGTG 
CTCGTGGCCC CGGGCGGCGC TCCGGTCAAG GCGTCGGCAA GCTGCGGATT GAATTCCGGA 
TTGTGGGCGT TTGCCCGGGT TCTGCAGAAC GAATATGAGT TCATCGATAT CCATACGCTC 
GATCTTGCCG GCGATGCCGA TATCGGCCGC AAGGATATTC TCTCCTTGGC GATCCCCCTG 
CTGACGGTTT CGGGATTGAA CCGGGAATGG CTGTTTGACC GGAAGACGGG CCTGCTTTCC 
GAGCTCCGGG CGGTTCCCGG CGCTACGAAC AAGGCTGATG GTAAAACGAC CGCCTTCACG 
GCCGCGACCA TTCGCCAGCG TGTCAGCTCT CAGATCGCAA GCATCGCCTG GGAAGAGACG 
AACATACCGG AGCCGGGTCG CGGTGAAGTC CTCGTTGCCG TCGCGGCGAC CGGCCTGAAT 
TTCCGCGACG TAATGTGGGC CATGGGTCTG CTGCCCGAAG AGGCGTTGGA GGATGGCTTT 
GCCGGAGCGA CGATCGGCAT GGAACTCTCC GGCCATGTGG TCGCGGTTGG CGAAGAGGTC 
GACGACCTCG CCGTCGGCGA TGCGGTGATG GCGATCGCCT CCTCCGCGTT CTCGACACAT 
GCGATTGTCG CTCGCGCCGG CATTGCCAAG TTGCCGCGCG CCATGAACCC GGTGGCCGCG 
GCCACCCTAC CGGTCGCCTT CCTTACCGCC TATTATGCCA TTGTCGAACT CGGCCGCATT 
CAGGCCGGGG AAACGATCCT GATCCACGGT GCTGCCGGCG GCGTCGGTCT CGCCGCGCTT 
CAGGTCGCTA AGTTGAAGGG AGCCAAGGTC ATCGCCACGG CGGGAACGCG CGAAAAACGG 
CGCTTCCTGA CGATGCTCGG GGCCGACTAC GTCTTCGACT CTCGTTCGCT CGGCTTCGTC 
AACGATGTCC GTTCGGTCAC CGGCGGCGAA GGCGTGGACC TCGTGCTCAA CTCACTTTTT 
GCCGAGGCGA TGGAGCAGAG CCTCTCGCTG GTGAAACCTT TCGGCCGGTT CCTGGAGCTT 
GGCAAGCGCG ACTACTACGC CGATAGCAAG ATCGGGCTGA GGCCATTCCG CCGCAATGTC 
AGCTATTTCG GTATCGATGC CGACCAGCTG CTCGTGAAGG CTCCGGATCT GACGAAACGC 
ATCTTCATGG AGATTGGAGC GCTGTTCGAG GAAGGCAAGC TTACGCCGCT TCCCTACCGC 
GCCTTCGATT ACGATGAAAT CGGCAACGCT TTCCGGCTGA TGCAGAATGC CGGACACATT 
GGCAAGATCG TCGTGCTGCC GCCCGTGGCC GGAAGGCACG AGGTAATGAA GAAGCCTGAG 
AGAGACATGA AGGTCGATCC GCACGGCATC CATCTCGTCG TGGGCGGCAT CGGCGGCTTC 
GGCCTCGTCA CCGCCAACTG GCTCGTAGAA AGAGGTGCGC GCCGGATTGC GCTGTGCTCC 
CGCCGCGGTC TGCCGGATGC GGAAACGCGC GCCATGATCG AACGCTGGCA GAACGACGGC 
GTCGTCGCAT CGGTTCACGC TTGCGACATC ACGGATCCCG CGGCCGTGGA GACGCTTCTG 
GATGCGCTTC GTTCCGAAGC GCCGCTTCGC TCCGTCATTC ATGCGGCGAT GGTGCTCGAC 
GACGCGCTGA TCAGCAATCT CAATCGCGAG CGCAACCGCC CGGTCATCGA CACAAAGGCC 
AAGGGAGCGG CCATTCTCGA TCGTCTCACC CGTGGCGACA GGCTCGACAA CTTCATCCTG 
TTCTCGTCGG CAACGACGCT GGTCGGCAAT CCGGGCCAGG CGAATTACGT CGCCGCCAAC 
GGCTATCTCG AGGGCCTTGC CCGCGCACGG CGCCAAGAGG GCCTTGCGGG CCTTGCCGTG 
GGCTTCGGCG CGATCGCCGA TGCCGGCTAC CTCACGCAGA ACGCCGAAGT CAACGACCTG 
CTTGCCAAGC GAATCGGTAA AACGGCGTTG AAGGCTCAGC TGGCACTCGA CATGGTCGAA 
AGCCATATTG CCGCGGATCC GGGCACTGTC GACGCGGCCG TCGTGATGAT CTCGGAGATC 
GACTGGACGG CTGCCCGCAA TTTGCCGGTC GCCCGCAACG CGCTCTTCGA GGTAATCCTG 
CGAAGCGCCG ATCAGCATGC CGCCGGCGCC GAGGGCACGA AGATGGATCT CGTCGCAATG 
ATCGAAGGCA AGTCGCCACA GGAGGCCGAG GACATCCTCT TCGATCTGGT GGCCGGCGAG 
ATCGCTGCCA TCCTGCGCGT GTCGAAGGAT ACGGTCACGC GCGGAAAGAT CTTGAAAGAG 
ATCGGCCTGG ACAGCCTCAT GGCCGTGGAA CTGGGCATGA GTTTCCAGCA GAACACCGGC 
TTCGACATGC CGTTGAGCGG CGTCGCTGAT AACACGACGG TCGGCGATAT CGCACGCAAG 
CTGCATGAAA AGGTAAGCAA GCGCGACCAG AGCAATGAGG GCGAGGCCGG AGACGACAAG 
ATCGTAACAG CGCTCACGCA GCGTCATGTC GGCGCGGCCA AGGAAAAAGC ACTGACCCAA 
TGA 

 

Protein sequence

MTVEIIGRAC LAPGAKSPQA LFKILRQGKC TVTRVPADRW DMARFWHPVM GTPGKTYSFA 
AGVLDQIYDF DPAVFGMSQR EAMYMDPQQR VLLQLAWRAL EDANISVASL HGENVGVYVG 
ASSLDHANLT VDDPAAAGPY FMTGNTLSIV SNRISHVFGL SGPSMTVDTA CSSSLVALDQ 
AMRALNAGEI DTAIVGGINV LAHPLPFVGF AQARMLSPEG LCRAYDNDGA GYVRAEGGVV 
FVLRRTDRAQ RERDRSYARI VASGVNSAGR TNGISLPSRE AQANLLKMIY EGNGIDANQV 
AFVEGHGTGT KVGDPAEVWS IGTVIGAKRR APVPIGSIKS NIGHTEPASG LFGMMKAVLA 
LENNYLPASL HFETPNEQID FDGLNVRVTA NPIELLKGKR ARLAGINSFG FGGANAHVVI 
SDPDPAQGEK ATTSPAGHVF LASAHTVSSL ENLLRDYKAA FAHANKEEMR AIVAASGANR 
THLRHRFAVR SDHPEDIVRA IANHLEKPGS DIGETGEAAA KDAKVAFVFS GNGSQWAGMG 
IEAFRENLHF RQSFTSVSAL FRFHSDVVLT DLLTDPELDG KLADTKVAQP LLFAIQAALS 
DSLVAMGIKP TAVFGHSVGE IAAAYAAGAL SLVDAVSIVA KRSLHQDLLA GQGTMAAVMF 
GAEAAKAFAA ERGLEDICVA AINAHNSVTI SGPADEISAY RDAARKAKIP VQILDINYPF 
HHPIIDRAKE AFLSDIPDIA PRRTELTYLS TVTGAALDGT ELDPDYWWKN VREPVRFQAA 
AEAALELGCR LFIEISPRPI LGSYVKETIK QAAVPALVVP TLLRDAGGSG HDPISASMAR 
AVAHGAAVDR SRVYGKRNAF VELPALPFEP VELRPATTTD ATDLFGRSAK PYRLNGWRGD 
PNAGSWKNHV DAHLFPDLAE HVVDGKAILP GSGFIEIAVS AAQQYHGSDE VEITNLEIVR 
PLELSDSRIM ELSTILSPET GDIEIRSRER LSEDDWTVHA VARSRKPLPA TRNECPSTKG 
LARTASVSAA KAYGTAKQFG LDYGPRFQLL SKAVAYGDRL IEVELKQPQA SGHPHLTYAL 
HPISVDATFH GLVALFDRFT GDRGGAPYIP VRFGSVRVVN AGRRIARAMI EIERVSANSI 
KAKFHFFDET GAAIAHFEDC RFRRTYLRKH KTLEGLSFHY EAVLSDVLVP GMKRAAAMPA 
KLVEPIDNDG LDNATLLFNA AIYRACQEIA LKLGKGTATV RSDALPGDLD FQCFLTSCLL 
TLEDAGLCEH QNGTWKVAPE FMLPTVPEIL GELYGDRPDR AVEAVLVNNA YTEALSRLDA 
LLAPAPAGDA SASFNAAFMS EATLDHQAVH SAASRSRMDH VLHTLAGALA AQPAGSRLRL 
IELGSVSAGF SRRLADLAAR HGAALSIFEP RDNAQRNLEI AFEEDAHVRV LKKSEFADIG 
SFDLAVSASD NLYHLIEEGS GVRSALRSML PGSGLIAAVS APSIFADFAL GLSGGWFERS 
QAAEFPIGKI AAVPHWQKCL EDLDLGDVVV TDRECPHGST ILIEARGTAA ASVGEVPGGG 
AAPYLLIEPA TQKILAAGKG ANHVRVTGDI AADLATLRDA LAALGDRPVR AIFMSEADRA 
ADEDSALLQS RVLALSAFAE ALKQHLAGAE PDGDDRPRLV LVAPGGAPVK ASASCGLNSG 
LWAFARVLQN EYEFIDIHTL DLAGDADIGR KDILSLAIPL LTVSGLNREW LFDRKTGLLS 
ELRAVPGATN KADGKTTAFT AATIRQRVSS QIASIAWEET NIPEPGRGEV LVAVAATGLN 
FRDVMWAMGL LPEEALEDGF AGATIGMELS GHVVAVGEEV DDLAVGDAVM AIASSAFSTH 
AIVARAGIAK LPRAMNPVAA ATLPVAFLTA YYAIVELGRI QAGETILIHG AAGGVGLAAL 
QVAKLKGAKV IATAGTREKR RFLTMLGADY VFDSRSLGFV NDVRSVTGGE GVDLVLNSLF 
AEAMEQSLSL VKPFGRFLEL GKRDYYADSK IGLRPFRRNV SYFGIDADQL LVKAPDLTKR 
IFMEIGALFE EGKLTPLPYR AFDYDEIGNA FRLMQNAGHI GKIVVLPPVA GRHEVMKKPE 
RDMKVDPHGI HLVVGGIGGF GLVTANWLVE RGARRIALCS RRGLPDAETR AMIERWQNDG 
VVASVHACDI TDPAAVETLL DALRSEAPLR SVIHAAMVLD DALISNLNRE RNRPVIDTKA 
KGAAILDRLT RGDRLDNFIL FSSATTLVGN PGQANYVAAN GYLEGLARAR RQEGLAGLAV 
GFGAIADAGY LTQNAEVNDL LAKRIGKTAL KAQLALDMVE SHIAADPGTV DAAVVMISEI 
DWTAARNLPV ARNALFEVIL RSADQHAAGA EGTKMDLVAM IEGKSPQEAE DILFDLVAGE 
IAAILRVSKD TVTRGKILKE IGLDSLMAVE LGMSFQQNTG FDMPLSGVAD NTTVGDIARK 
LHEKVSKRDQ SNEGEAGDDK IVTALTQRHV GAAKEKALTQ