Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0110 |
Symbol | |
ID | 5320938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 121776 |
End bp | 123476 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640789042 |
Product | Long-chain-fatty-acid--CoA ligase |
Protein accession | YP_001325805 |
Protein GI | 150395338 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.963067 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGAAG CAAGTACGCA GCAGGCAGGT TCCAGCACGG CGAAGATCTG GCTCGCATCA TACCCGCCGG GCGTGCCTGC CGAGATCGGC CCTCTCACCT ATCGTTCCAT CGGAGAATTT TTCGATCATG CGGTCGCGCA ACATTCCTGG CGGCCCGCAT TCACCTGCAT GGGAAAGGCG CTGACCTTCT CGGACCTCAA TGCGTATTCG GCAAAGATCG GCGCCTGGCT GCAGTCGCTG GGTCTTGCGA AGGGCGACAG GGTCGCGGTG ATGATGCCCA ATGTCCTGCA AAATCCCGTC ATCGTCTATG GAATCCTGCG AGCCGGCTTC ACCGTCGTCA ACGTCAATCC GCTCTATACG CCGCGCGAAC TGGAGCATCA GCTGGTCGAC TCCGGCGCCA AGGCGATCTT CGTGCTTGAG AACTTCGCGC ATACTGTCGA GCAGGTTCTT GCCCGCACGG CGGTCAAGCA TGTGGTGGTC GCCAGCATGG GCGACATGCT CGGCGCAAAA GGGTTGATCG TCAATCTGGT GGTGCGCCGC GTCAAGAAGC TCGTCCCCGC CTGGTCGATT CCCGGACATC TTTCGTTCGG GGCGGTTCTT GCCAGGGGAG CGAAACTCGG CTTCAAGCGG GCGAACGTGG CACCGTCGGA TATCGCCTTC CTGCAATATA CCGGTGGCAC CACCGGCGTT TCCAAGGGCG CAACGCTGAC GCACGCCAAT CTTCTTTCCA ACATGGCCCA GATGGAACTG TGGCTGAACA CGGCCTTCCT GCGCAAGCCG CGCCCGGAAA GCCTCACCTT CATGTGCGCG CTGCCGCTCT ATCACATCTT CGCGCTTACG GTGAATTCGC TGATGGGTCT TGCGACCGGC GGCAACAATA TCTTGATACC GAATCCGCGC GACATTCCCG CCTTCGTCAA GGAACTCGGA AAGTACCGGA CGAACATTTT CCCGGGCCTG AACACACTGT TCAATGCGTT GATGAACAAT GCCGAGTTCC GCAAGGTGGA CTTCTCGTCG CTGATCCTGA CCTTCGGCGG CGGGATGGCA GTGCAGCGAC CGGTCGCCGA ACGCTGGCTG GAAATGACGG GCTGCCCTAT CCACGAGGGC TACGGGCTTT CGGAGACATC GCCCGTCGCG ACCGCCAATC GCCTCGATAC CGACGACTTC ACCGGCACGA TCGGCATACC GCTGCCCTCG ACGGAGGTGG AGATCCGCGA CGAGGACGGA AATACCCTCC CCTTGGGTGA AGTCGGCGAA ATATGCATCC GCGGGCCGCA GGTGATGGCA GGTTACTGGC AGCGCCCCGA GGAAACGGCG AAAGCCATTT CGCCGGACGG CTTCTTCCGG ACCGGCGATG TCGGCTTCAT GAACACCGAG GGGCTCACCA AGATCGTCGA TCGCAAGAAG GATATGATTC TCGTCTCGGG GTTCAACGTG TTCCCGAACG AGATCGAAGA GGTGGCGGCG ACCCATCCCG GCATTCTCGA ATGTGCCGCA ATCGGTATTG CCGATCCGCA TTCCGGCGAA GCGGTCAAGC TCTTCGTCGT GCTTAAGGAT CCGAATCTCA CTGAAGAAGA GATCAAGCGC CACTGCGCAG CCAGTCTTAC CAACTACAAG CGGCCGCGTT TCGTGGAAGT CCGCACCGAA CTGCCGAAAT CGAATGTCGG CAAGATCCTG CGCAAGGACT TGCGCGGCTA G
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Protein sequence | MAEASTQQAG SSTAKIWLAS YPPGVPAEIG PLTYRSIGEF FDHAVAQHSW RPAFTCMGKA LTFSDLNAYS AKIGAWLQSL GLAKGDRVAV MMPNVLQNPV IVYGILRAGF TVVNVNPLYT PRELEHQLVD SGAKAIFVLE NFAHTVEQVL ARTAVKHVVV ASMGDMLGAK GLIVNLVVRR VKKLVPAWSI PGHLSFGAVL ARGAKLGFKR ANVAPSDIAF LQYTGGTTGV SKGATLTHAN LLSNMAQMEL WLNTAFLRKP RPESLTFMCA LPLYHIFALT VNSLMGLATG GNNILIPNPR DIPAFVKELG KYRTNIFPGL NTLFNALMNN AEFRKVDFSS LILTFGGGMA VQRPVAERWL EMTGCPIHEG YGLSETSPVA TANRLDTDDF TGTIGIPLPS TEVEIRDEDG NTLPLGEVGE ICIRGPQVMA GYWQRPEETA KAISPDGFFR TGDVGFMNTE GLTKIVDRKK DMILVSGFNV FPNEIEEVAA THPGILECAA IGIADPHSGE AVKLFVVLKD PNLTEEEIKR HCAASLTNYK RPRFVEVRTE LPKSNVGKIL RKDLRG
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