| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5606 |
|---|
| Symbol | |
|---|
| ID | 8729380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 6821990 |
|---|
| End bp | 6824266 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | Spermine synthase |
|---|
| Protein accession | YP_003390370 |
|---|
| Protein GI | 284040440 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTAC CCACTCGAAC CGTAACATTA TCTATAAAGC TGCTATACTG TTTGTTCTTT
TTGTCCGGAT TTGCAGCCCT GTTATATCAG GTAATCTGGC AACGGCTACT GGTTTTTTAT
ACCGGTTCCG ACACCATCAG CATTAGTCTC ATTGTCTCTG CCTTCATGAC CGGTCTCGGG
CTGGGCTACC TCGTTGGGGG GCGCCTGGCC GACCGGGCGC TGGCGGCTCG CAACCTTCGC
TATTTTTTGT GGGCCGAAGC GGGCATTATG GGTTGTGCTG CCATCAGCAA GTGGGTCTTG
TACGACATCC TGTATGTCAG TAGCCCAATC GACAATGCCA GCCCCCTGGT TATGTACGTC
GTCGTGTTTG GGGTATTGCT GTTGCCCACC TTTCTCATGG GTTTCTCCCT ACCGGCTTTA
TCACGGGCCT TCCGGTTTGG CGACGGTCCC GCGCAGGGTC GTTACATCAG TCTGCTTTAC
TTCGTAAACA CATTGGGGGC GGCTGTAGGG GCTTTCGTTA CAGGCTTCCT GCTGGTTCGT
CGGATCGGCT ATGAGTCTTC TATCTGGGTA GGTGTACTCT TCAATGGACT ATGCGTGCTG
GGCGCGCTCT GGCTGGGCCG ACGGCTGCAC CATTCCACAG CCATCCGGCA GGCACCCGGC
TACTCAACAT CGGCCCCCCT GCAATTCACA CCAGCCTTAA CGTTCTGGTC GGTGCAGTAC
GCTTTGTCGG GGTTGGCCGC GCTTTCGCTG GAGCTTATCT GGTTTCGGGT GCTCGAAACG
CTGATCAAAT CGGTTTCGCT AACTTTTTCC ATGCTGCTGG GGGTTTATCT GGGCTCTATG
GCACTGGGTA CGCTGGTGGG CGTTGGCTTG GGGCGAAGGC CATCCTTCCG GGCACCGGCG
CGTCGCGAAC ACGTGTTTTT ATGCGCACAA ACGGGCTTAT ATCTGTATAC TGCCGCATCG
ATAGGTATAT TTATTGCTTC TATTGGGCGA GTTTCGTCGC TCGATTTCCT CTGGAATTAC
TTCAAAAGTG GCGAGCCTGT TCTGTCGCCG GGCTTTGCCC TGATTACATA CGGCCTTATT
CCGCTGTTTT TGCTATTTAT ACCTACTTTT TTGATGGGTT TAAGCTTTGC CGTCTCGCAA
TCACTGATTC AGGACCGGTT TGACGAGGTT GGCCGTAAGG TAGGCTGGTT ACAGTTTGTC
AATATCGTCG GCTCGGCGCT GGGCGCCTGG CTGGTTACGT GGATCGGCTT TCCGGTTCTG
GGAACGGCGC TGCTCCTTAA ACTTATTGCC GGGCTTGGTA TCATCTACGG CTTTGCCCTG
TTTGCGCGTC GGCATCTCAG CGCGTTGGCA GTATCCGTGC TGACGGTTGT GCAAATTCTA
ATCCTCGTGC AAATTCCCGA TAATACCAGC TTTTGGCAAC GCCTGAACGG TGTTGACAAA
GCAACCGATC TGCTCTTTAA CGAAAACGAA TCGGGGGTGT CGGTAATCAA GCTAATGCCC
GACCATCGGG CTGGCGTTGT CTTTGTCAAC GGTCTTGGCC AAAGTGCCTT GCCTTATTCC
ATCGACGAGG TACACACATT GTTGGGCGGG TTGCCAGTTA TGATGCATCC TAACCCGGAG
CGCGTCGCCG TGATCGGGCT GGGGTCGGCC GGAACCGTGC AAGGAATTGG TGGTCGGTCC
GAAACCCGAC AAATCGACTG TTTCGAGATC GTCAGTAACC AGGCCCGGAT TCTAGCGGAG
TACGGGGCCA AGGTTAAAGA CAGTAGCGTT GACAATGTAT TGTCTGACGA GCGACTCAAA
CTCATCTTCC GGGATGGTCG GTACGCCCTT CAGCATAGTT CGGCTGCCTA TGATGTAATT
GAGGCAGACG CCCTTCGGCC TACGTCGGCT TTTTCAGGCA ATATTTATTC CCGGGAGTAT
TTCGAATTAC TTCGATCAAG GCTTCGGCCG GGAGGCTATG CGGTTACTTG GGCTCCTACA
GTCCGTATCC GCAATACGTT CCAGACAGTA TTCCCTTATA TTCTTTACGT CGATGATTTG
GTCCTGATCG GGAGTAATCA ACCCATTAAG GTCGATTGGG TCGCGATTCA GCAACGCGCG
ACGACGGGGT TTGGCCAGCT CCATTACAAA TCGGCCGGTA TCGACTTATG GAAGATTTTG
ACCAAATACC GATTGCATCT TCGTGCTCTG CCCGGCAGTC AGCCTATTAG CCGGGAAATC
AACACAGACT TGTTTCCGAA AGATGAATAC AGTATCCGGC AACGGGACAA AGCATAG
|
|---|
| Protein sequence | MTLPTRTVTL SIKLLYCLFF LSGFAALLYQ VIWQRLLVFY TGSDTISISL IVSAFMTGLG
LGYLVGGRLA DRALAARNLR YFLWAEAGIM GCAAISKWVL YDILYVSSPI DNASPLVMYV
VVFGVLLLPT FLMGFSLPAL SRAFRFGDGP AQGRYISLLY FVNTLGAAVG AFVTGFLLVR
RIGYESSIWV GVLFNGLCVL GALWLGRRLH HSTAIRQAPG YSTSAPLQFT PALTFWSVQY
ALSGLAALSL ELIWFRVLET LIKSVSLTFS MLLGVYLGSM ALGTLVGVGL GRRPSFRAPA
RREHVFLCAQ TGLYLYTAAS IGIFIASIGR VSSLDFLWNY FKSGEPVLSP GFALITYGLI
PLFLLFIPTF LMGLSFAVSQ SLIQDRFDEV GRKVGWLQFV NIVGSALGAW LVTWIGFPVL
GTALLLKLIA GLGIIYGFAL FARRHLSALA VSVLTVVQIL ILVQIPDNTS FWQRLNGVDK
ATDLLFNENE SGVSVIKLMP DHRAGVVFVN GLGQSALPYS IDEVHTLLGG LPVMMHPNPE
RVAVIGLGSA GTVQGIGGRS ETRQIDCFEI VSNQARILAE YGAKVKDSSV DNVLSDERLK
LIFRDGRYAL QHSSAAYDVI EADALRPTSA FSGNIYSREY FELLRSRLRP GGYAVTWAPT
VRIRNTFQTV FPYILYVDDL VLIGSNQPIK VDWVAIQQRA TTGFGQLHYK SAGIDLWKIL
TKYRLHLRAL PGSQPISREI NTDLFPKDEY SIRQRDKA
|
|---|
| |