Gene Slin_5150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_5150 
Symbol 
ID8728916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp6288786 
End bp6289547 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content52% 
IMG OID 
Productribonuclease III 
Protein accessionYP_003389921 
Protein GI284039991 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0990083 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.260918 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAAATCG CTCTGCCCCG TAGTTTATTC AATCCTCTCG ACTGGTTCAA GCGTGGCAGC 
GCTGATCCGC GCAAAAATCT GCGCCGGTCC ATTGCGCATA TCATTGGCGC ACGCCCATCA
AACCTTGGCT TGTATCAGTT GGCGCTCCGT CATACGTCGG CGTCGAAAGC GACGGCTATT
GAGGGATTTC GGGAATCGAA CGAACGGCTG GAGTATCTGG GCGATGCTGT GCTGGGTATG
GTTATTGCCG AATTTCTGTT CAAGAAGTAT CCCTACAAAG ATGAAGGCTT CCTGACGGAG
ATCCGTTCCC GAATTGTTAA CCGGGAAACA CTGAACGGGA TTGCCCGCAA AATTGGCCTC
GATCAGCTCA TAGAATACGA TGGAAGTCGG ACACGTAGCC TGCCCGCTCG TACATCCATG
TATGGCGATG CGCTCGAAGC GCTGGTTGGC GCCGTGTATC TGGATAAAGG GTTTCGGTTT
TCGCGCCGGT TTATTCTCAA GGATTTGCTG GCCCATTACG ATATTGAGTC CGTCGTCCAG
AACAATGGCA ACTACAAGAG CCGTCTGATT GAGTGGGCGC AACGCGAAGG CAAAGAAATC
CGCTTCGAAA TCGTTTCAGA AAAAGGGAAC AGCCATTTCC GCGAGTTCAT TTCGCAGGTT
GTTATCGACG ATGAGCCATT TGCCACAGGA AGCGGATACA GCAAGAAAAA AGCCGAACAG
GCCGCAGCCG AAAAGGCTTT CGAAATGCTG ACAGCTAAAT AG
 
Protein sequence
MQIALPRSLF NPLDWFKRGS ADPRKNLRRS IAHIIGARPS NLGLYQLALR HTSASKATAI 
EGFRESNERL EYLGDAVLGM VIAEFLFKKY PYKDEGFLTE IRSRIVNRET LNGIARKIGL
DQLIEYDGSR TRSLPARTSM YGDALEALVG AVYLDKGFRF SRRFILKDLL AHYDIESVVQ
NNGNYKSRLI EWAQREGKEI RFEIVSEKGN SHFREFISQV VIDDEPFATG SGYSKKKAEQ
AAAEKAFEML TAK