Gene Slin_4550 details

Gene Information

• Locus tag: Slin_4550
• ID: 8728314
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: -
• Start bp: 5514801
• End bp: 5518379
• Gene Length: 3579 bp
• Protein Length: 1192 aa
• Translation table: 11
• GC content: 55%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003389329
• Protein GI: 284039399

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 0.816272
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATCGTC AGCTTTCTAT CGTTTGGTTG ACTACCTGTC TGCTTACCTG GCTGACCACG 
ATCACGTATG CACAAACCAC CACGCTCACG GGCTACGTGT CGGATGCCAC CACGGGCAAA 
CCCATGCCAT TTGCCAACGT TTATCTTAAT GGCAGCACCC GCGGTACAAC CACCAACGAA 
CAGGGGTATT ATTCACTAAA GGGCGTGCCG CTTGGAACAG TTGAGGTAGT GGCTTCCTTT 
ATTGGTTATC AGCCCAGCAA ACGCACGTTT CGGCTGGATA ATAGTCCCGA CAATAGAGTT 
AGCTTTCGGC TTAAACCCAG CGATCAAACG CTGGCCACCG TTACCGTTCG GGGAAATCCT 
AAAAAATGGC AACAGCACCT GCGGCAATTC AAACGGCAGC TACTGGGAGA ACCCTTTGGC 
GGCCAATGCC AGATTTTAAA CGTCGATGCA CTAAGCTTTC ACGAAGAAGA CAGCCACCTG 
AAAGCCACCG CCAGCGAGCC ACTCGTTATT GAGAATCAGG CGCTGGGGTA TAAAATATGG 
TACGACCTGC TGCACTTCGA CGGAACATCG AAAAAGGTGT ATTATGCCGG AGCTACCCGA 
TTTGAAGAGA TCAAGCCGAC GGATGAGCGG CAGGCTAACC GATTCCGGCG TAACCGAATG 
CGGGCTTATC AGGGATCGAC CCGGCATTTG ATGGCCAGTC TGATCGACAG CACGTACGAG 
AAAGAGGGCT TCCTGGTTTA TCAGGAGGAT CTGGTCGTGC CCATTGCCAA AAACAGAGAT 
AATCGAACCA CATTATTCGG TTCGGTGAAT GGCCGTCTCA AGCCATTACG CATAAAAGAA 
CTGATTCAGC CGGGGCGATT GCCCAACGAA CGACGGCTGG TATCGGCCCG GCCCCTGGTG 
GTGTTTTACA CCAATGCCCA GTCCAATTAT TCACCGTATT TCGATGCCCG TTATGCCTAC 
ACGCAAATTG TGCTACCCGC CGGACAACTC GAAATGACGG TGGACGGAAC GGTTACGCTG 
CCCTTTGGCG CTGAAATTCA GGGGTCGCTG GCCGACGACC GCGTATCGAC CATGCTGCCT 
GCTGACTGGA CCCCTAATCC GGCCGATGCC GAATCTACGA AGACTAACGC CCCCGTAGCT 
AATCAGGGAA AGCTGATGCC ACCCGACGCC CGGATGAATC GGATTGCAAC GGCCTTCGAT 
GAGCGGTTTC AGGCACTAGC ACCGGTTTTG TTTCTGCATA CCGATAAACC TCTTTACGCT 
ACCGGCGACC GGGTTTGGCT GAGTGCGTAC CTGCTCGATG CGGGAACCAA CCGCCGACCA 
CTCGGTGAAA CAGCCATTCA TACTGACTTG CTAACGGCCT CGGGCAAACT TATTCAACAC 
CAGTGGCTAA AGGTAGAGGA CGGTCGGGCC GTTGGGAACT TCCGGTTGTC AGACACACTG 
GCGTCGGGAA CCTATCGGCT ACGGGCCTAT ACGGATGAAG ACGACGGCCA GCACCGGCCT 
GCTTTTGACC GGTCTATTGC GGTGTATAAC ATTCTTCAGG GCACGGGCAT GACGCGCAAA 
TCTGTTGCTG CCGATACGTC GCAAAAGTCA ATGGACGTTC AGCTTCTGCC CGAAGGCGGT 
CGATGGCTGG TGGGGTTGCC TGCCCGGCTA GGCATCAAGA TCGTTCAGCC AAACGGACAT 
GGGTTAGCTG TAACGGGTCG TATTGTAAAC GAGCAGGGCA CGGAAGTCGC CCGGTTTGTA 
ACCAGTGCGC TCGGGATGGG TAGCGTCGTG TTGACGCCCC AGAGCGGCCG TAAATATTAT 
GCCGAAGTGC AGCACAATGG TTACCAGCAG TTGACTCCGC TGCCGCCCGC CGAGTTGGAA 
GGGTTGATGC TGTCGGTCGA TGTAGTCAGC GATACCAGTC GGCTGGCTCT TACGATCCTG 
GGTACCAGCC GCCCGGCAAA TGATTCGGTG TATGTGCTGA TTCAGCAACA GGGTCGACTG 
GTAGACCAAC GGAAAATTTT GCTGGAAAAC GGCGTGGCGC GGGTAAGTCT GCCGAGTGCA 
TCGCTGCCGT CGGGGCTTAA CCAGATCACG CTTTACGACG CTACCGCCCG CCCCCAAGCC 
GAACGGCTGG TCTTTTTACC CGAACGGATA CCGCCCATAA AAGTAATTGT GGGGGTGAAT 
AAAACGCGTT ATCAGCCCCG TGAGAAGGTG ATTATGAGTG TTAACCTGAA TGATGATGGA 
TTACCCGTCG TGGCAGGGTT ATCGGCCTCC ATCACCGATA TTGGACAGGT ACCTGACGAT 
TCCGCAGAGG CCAACATTCG TACCCATTTA TTGCTCACCG GCGAATTGCG CGGACATGTT 
GAACAACCTA ATCGGTACGT TACCGATAAC TCACCCGCAA CCCGCCGGAT GGTCGATGAC 
CTGTTATTGA CGCAGGGCTG GCGACGGGTA AGCGGTACGC CCTCCACCGA ATTACTCGGG 
GGCGTTTCTG TCATCGGGCG GGTACTCAAC GCTAAAAACC AACCGATGGC GGGCGCACAG 
GTCATTTTGG CGTCTACCGC TGCCGGACAG TCGTTTGTGC GGTCGGCGGG GGCCGACGAG 
CGGGGCCGGT TTCGACTGGC AGGGTTTTCC ATTGCCGATA CGCTTGAGCT GATAGCCCAG 
ATTACCGATC GTCAGTTAAA AGCTATTCCG GGTAAAGACG TTCGTCTGGT GCTGGAAGGG 
CCGCAAACTG GCTGGTTACC GGATACGGCG CGGGTACTAC CGAATTGGTC GGCTCTGCGG 
GCGCAACTGG ATGCGGCCCG TACCCGTCAG GAGGGAGACG CGGAGTTTTA CCGGGATAAA 
CGAGTGAAAT TACTGAAAGA AGTGACCGTT CGGGGCCGCA GAACCGACGA CCGGCCGGAA 
GATATTCAAC GATCCAGCCT GCACAAAGAG GCCGATGCTG TACTGCTTTT CGATGATAAG 
TCACCCCGTT TTTTCAATTT GTACGAAATG ATACGAGGCC GGGTAGCCGG GGTTACCGTG 
GCCCAGTCAA CCACGTCGCT GGTGGGAGCT TATCAGGTCA TTATTCGGGG AGTTGGCAGT 
CTTAAGAGCA GTACGCAACC GTTATTTCTG ATGGATGGTA TGCCCATTGA TGATGCCGAT 
GGTACGGCCC TGCTGTCTTT CAACCCGGCC GATATTGAGC GGATCGAGGT GTTGAAAAAT 
GGTGGTACGG TGGGTATTTA TGGTGTTCGG GGCGGCAACG GGGTTATTGC ATTTTATTCA 
AAACGTTTCC GGCCGGGGCA GTCGGCTGCC GACGATGAAA AGGCGGGTAT GAAACCGTTA 
CAGGTTATTG GCTTCCCGTC CGTTCAGCGG GAGTTTTACG TACCCCACTA TGAAACCGCT 
TCGGCGGATC GGCCCGGCGA AGGGCAAACG GAATCTTCGG AGCGTATCGA CTGGCGGGAT 
GTGCTGTACT GGAAACCCAT CATGCAAACA GACAGCCAGG GCCACAGCCA ACTGGTGTTC 
CCGCTATCTG ACGTAGTACG AACGTTGCGG GTGGTCGTGC AGGGCATCAC AGCCGATGGA 
CGACCGGTGG TGGGAACGCA ACTGATTCGG GTTCAATAG 

 

Protein sequence

MNRQLSIVWL TTCLLTWLTT ITYAQTTTLT GYVSDATTGK PMPFANVYLN GSTRGTTTNE 
QGYYSLKGVP LGTVEVVASF IGYQPSKRTF RLDNSPDNRV SFRLKPSDQT LATVTVRGNP 
KKWQQHLRQF KRQLLGEPFG GQCQILNVDA LSFHEEDSHL KATASEPLVI ENQALGYKIW 
YDLLHFDGTS KKVYYAGATR FEEIKPTDER QANRFRRNRM RAYQGSTRHL MASLIDSTYE 
KEGFLVYQED LVVPIAKNRD NRTTLFGSVN GRLKPLRIKE LIQPGRLPNE RRLVSARPLV 
VFYTNAQSNY SPYFDARYAY TQIVLPAGQL EMTVDGTVTL PFGAEIQGSL ADDRVSTMLP 
ADWTPNPADA ESTKTNAPVA NQGKLMPPDA RMNRIATAFD ERFQALAPVL FLHTDKPLYA 
TGDRVWLSAY LLDAGTNRRP LGETAIHTDL LTASGKLIQH QWLKVEDGRA VGNFRLSDTL 
ASGTYRLRAY TDEDDGQHRP AFDRSIAVYN ILQGTGMTRK SVAADTSQKS MDVQLLPEGG 
RWLVGLPARL GIKIVQPNGH GLAVTGRIVN EQGTEVARFV TSALGMGSVV LTPQSGRKYY 
AEVQHNGYQQ LTPLPPAELE GLMLSVDVVS DTSRLALTIL GTSRPANDSV YVLIQQQGRL 
VDQRKILLEN GVARVSLPSA SLPSGLNQIT LYDATARPQA ERLVFLPERI PPIKVIVGVN 
KTRYQPREKV IMSVNLNDDG LPVVAGLSAS ITDIGQVPDD SAEANIRTHL LLTGELRGHV 
EQPNRYVTDN SPATRRMVDD LLLTQGWRRV SGTPSTELLG GVSVIGRVLN AKNQPMAGAQ 
VILASTAAGQ SFVRSAGADE RGRFRLAGFS IADTLELIAQ ITDRQLKAIP GKDVRLVLEG 
PQTGWLPDTA RVLPNWSALR AQLDAARTRQ EGDAEFYRDK RVKLLKEVTV RGRRTDDRPE 
DIQRSSLHKE ADAVLLFDDK SPRFFNLYEM IRGRVAGVTV AQSTTSLVGA YQVIIRGVGS 
LKSSTQPLFL MDGMPIDDAD GTALLSFNPA DIERIEVLKN GGTVGIYGVR GGNGVIAFYS 
KRFRPGQSAA DDEKAGMKPL QVIGFPSVQR EFYVPHYETA SADRPGEGQT ESSERIDWRD 
VLYWKPIMQT DSQGHSQLVF PLSDVVRTLR VVVQGITADG RPVVGTQLIR VQ