Gene Slin_3980 details

Gene Information

• Locus tag: Slin_3980
• ID: 8727738
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 4783151
• End bp: 4786531
• Gene Length: 3381 bp
• Protein Length: 1126 aa
• Translation table: 11
• GC content: 56%
• Product: FG-GAP repeat protein
• Protein accession: YP_003388769
• Protein GI: 284038839

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0419563
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 33
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGACGT TTTTTTACCT CTTTACAGCC ACCCTTCTCC TCTCGGCCTG CGACAGTACA 
GACACGCTGT TCGAGAAACT CCCTTCCTCC CAAACAAATA TTACCTTCAA GAACGCGCTG 
GAAGAAGCAC CGGATTTTAA CGTCCTCAAG TACGGCTATT TCTATAACGG CGGGGGCGTG 
GCGGCTGCTG ATTTCAACAA CGACGGCCTA ACGGATCTGT ACTTCACAGG TAATCTCAGC 
CCCAACAAAC TATACCTGAA CAAAGGTGAT TTAACCTTCG ACGACATTAC TGAAAAAGCC 
GGTGTTGCCG CTGCCGACGG CTGGAACACG GGCGTCTCGA TTGTCGACAT CAACGCCGAT 
GGCTGGCTCG ATATCTACGT GTGCCGCTCG GCCGCTTCGG ATATTCTATT ACGCCGTAAC 
GTACTGTTCA TCAATAACAA AGATTTGACA TTTACCGAGA AAGCCGCCGA CTATGGCCTC 
GACGACCCGG CTTACTCCAC CCAGGCCGCC TTCTTCGACT ACGACCGCGA TGGCGATCTG 
GACTGCTTTC TGCTCAACCA TTCCGTGCAG GAATACGCCG GGTTCAGCCG CATGATCAGC 
GATTACAAGC AACAGGCAAA CCCCAATTAT TCCAGTAAAC TCTACCAGAA CCAGAACGGC 
AAATTTGTGG ACGTGTCGGC CTCAGCGGGT ATGGTTTCCA ACGTGCTGAG TTTCGGGCTG 
GCCGTGGCCG TAACTGATTT CAACAACGAC GGCTGGCTGG ATTTCTACGT CTCGAACGAC 
TACAACGAAA ACGACTACCT CTATATTAAC CAGCAGAACG GCACCTTCAG GGAAGTCGTG 
CGGGATGCGA TGGGCCACAC GTCACTCTAC TCCATGGGAT CCGATGCCGC CGATGTGAAC 
AACGATGGCC GCATGGACCT CCTCACGCTG GACATGCTCC CCGAACGCAA CGAGCGTATT 
AAGCTCACCT CCGGCGACGA TAACTACGAC AAGTACACTC AACTACTCCG TTCGGGCTTC 
CACCATCAGA CCATGCGCAA CATGCTTCAA CTGAATGTGG GGGAGATGGC AGCGGGGGCG 
AATAAAGGGG GTTCTCCACC TTCTACTCCC CTCTTCAGCG AAATAGGTCA ACTGGCGGGC 
ATTTCCAACA CCGACTGGAG TTGGGCGGGG CTATTTGCGG ATGTCGACAA CGATGGCTGG 
AAAGACCTGT TCGTGACCAA CGGCTACGCC CGCGATTACA CGAACATGGA GTTTCTGAAG 
TTCACGATGG ATGAGCAGTT GAAAGCCCGC CAACCGGGTG CGCCAACAAC ATCGCTGGAC 
CCGATGGCCG TGATCGCTAA AATGCCGAGC ATCAACGAAC CCAATTTCAT CTACCGAAAC 
CGGTCCGGTG ACTCGCAGTC CGCGGTCCGG CGATCCGGTG ACTCGCGATC CGGCCAATTG 
ACATTCACAA ACGAAACCAA AGGCTGGGGA CTGGACGAGC CAACGCAATC GAACGGGGCC 
GTTTATGCCG ATCTGGACAA CGACGGCGAT TTGGATCTGG TCATCAACAA TGTGAACGCC 
GAAGCAGGCA TCTACGAAAA CCACACGAAC GAAAAGGAAT TAAACTACTA CCTGAGCCTT 
CAGTTGAAAA GCCCGAACCC GGCCCAATTG ATGGGTGCAC GGGCCACGAT CTGGGCGAGT 
GGCCAGATGC AGGTGCAGGA GTTCATGCCC GTGCGGGGCT TTCAGTCGGC CATGTACGGA 
CCATTGCTTT TTGGACTGGG AAAGTCCCCG GCGGCTGACT CGGTGTTGAT TCGCTGGGCC 
GATGGCAAAA CGCAGTTCAT AAACCTGAAA CAAACGGGCA AACCGGCGGC TGGCGCGGTG 
ACGATTGCCT ACGCCCCAAC GCCCGAACGG CCACAGCCCG TTCCGCCAAA ACCTTATTGG 
CAATCAACTA CCGGTCTGGT TTGGACGCAT CAGTCGGAAG CCGTCAATGA CTTTAAAATC 
CAGCCGTTGC TGCCTTATAT GCTCTCGCCC ACCGGTCCCT GTTTTGCCGT TGGTGACGCC 
AACGGCGATG GCCGCGACGA CGTTTTTGCC GGAGGTGGTC GTGGGCAGGG TGGACAATTG 
TTTCTCGCCG GCACAAACGG CTTTTCGCCC ATGCCTCAAC CGGCCTTCCT CACCGACCGC 
GCCTGTGCTG ATGCCGGGGC AGAATGGTTC GATGTAGACG GCGACAAAGA CCTCGATCTG 
GTGGTGAGCA GCGCGGGTTA CGAACTTCCG GCCGACGACC CACGGCTACA GGTCCGGCTG 
TATCTGAACG ATGGCAAAGG CCACCTGACA AAGGGAGCCT TTCCAGATGT ACGGGTGAGT 
GCGTCCTGCG TTCGGTCGGC GGATGTGGAT GGCGATGGCG ACCGGGACCT GTTTGTTGGG 
GCGCGGGTGG TACCGGGCCG CTACCCCGAA ACGCCCGTCA GCCATTTGCT GCTGAATGAC 
GGAAAAGGTC ATTTTACCGA TAAACTCAGC CCTATCCTGG CGCAACTGGG CATGGTAACC 
GATGCCGCCT TTGCGGACCT CACGCACGAC GGTCGGCCTG AGTTGATTGT GGCTACCGAC 
TTTGGCGCCG TGCAGGCTTT TTCCTACAAA GGGGAAACGC TGCACCGGCT GGATAACCTG 
TTGCCCCCGA CAACGGGCTG CTGGAATCGG CTGCTGGTGC AGGATATCAA TAACGATGGA 
AAGCCGGATA TTATCGCGGC AAATGCCGGA TTGAACAGCC AGCTTCAGGC CACGACCGAC 
CGCCCATTAA CGCTTTACGG CATCAAAAAC ACGGCGGGTG CCTTGTTGCC GGTTCTGGCG 
GGTTACGACC GGAATAATGC GGCCGATAAA CAGCCCTACC CTTTCAACGC TCGGGATGAA 
ATGCTCGATC AGGTGGTGAG TTTGCGAAAG AAATTCACCG ATTACACCAG CTATTCGAAG 
GCTACGATTA CCGATCTATT TGGGCCGGAT GAATTAAAAC AGGCGCAAAA GTTGGAAGCA 
TCCACCCTAC AGAGTGGCAT ATTTATGAGT GATGGCGGAC AAACCCCTTC GTTTACCTGG 
CAACCCTTAC CCATCGAAGC GCAGACGGCT CCAGCCTATG CCCTGGCGAC CGTAGACGTC 
AATCACGATG GCCTGCCCGA CCTGATTATC GGCGGCAACC GTGAGTATAA CCGGGTTCGG 
TTGGGCAAGG ACGATGCCAA CCGGGGACAG TTATTCCTGA ATCGGGGCAA AGGGCGTTTC 
ATTTACGTGC CGATGGCTGC ATCGGGCTTG CTTTGGGATG GCGATGTACG TGATTTTGCG 
ACCGTGAACG TTGCCGGACG TACTGATTTA CTGGTGGGTG CATCGGGTCG ATCGGTTCGT 
GGCTTTACAT TATCCCGATA A 

 

Protein sequence

MKTFFYLFTA TLLLSACDST DTLFEKLPSS QTNITFKNAL EEAPDFNVLK YGYFYNGGGV 
AAADFNNDGL TDLYFTGNLS PNKLYLNKGD LTFDDITEKA GVAAADGWNT GVSIVDINAD 
GWLDIYVCRS AASDILLRRN VLFINNKDLT FTEKAADYGL DDPAYSTQAA FFDYDRDGDL 
DCFLLNHSVQ EYAGFSRMIS DYKQQANPNY SSKLYQNQNG KFVDVSASAG MVSNVLSFGL 
AVAVTDFNND GWLDFYVSND YNENDYLYIN QQNGTFREVV RDAMGHTSLY SMGSDAADVN 
NDGRMDLLTL DMLPERNERI KLTSGDDNYD KYTQLLRSGF HHQTMRNMLQ LNVGEMAAGA 
NKGGSPPSTP LFSEIGQLAG ISNTDWSWAG LFADVDNDGW KDLFVTNGYA RDYTNMEFLK 
FTMDEQLKAR QPGAPTTSLD PMAVIAKMPS INEPNFIYRN RSGDSQSAVR RSGDSRSGQL 
TFTNETKGWG LDEPTQSNGA VYADLDNDGD LDLVINNVNA EAGIYENHTN EKELNYYLSL 
QLKSPNPAQL MGARATIWAS GQMQVQEFMP VRGFQSAMYG PLLFGLGKSP AADSVLIRWA 
DGKTQFINLK QTGKPAAGAV TIAYAPTPER PQPVPPKPYW QSTTGLVWTH QSEAVNDFKI 
QPLLPYMLSP TGPCFAVGDA NGDGRDDVFA GGGRGQGGQL FLAGTNGFSP MPQPAFLTDR 
ACADAGAEWF DVDGDKDLDL VVSSAGYELP ADDPRLQVRL YLNDGKGHLT KGAFPDVRVS 
ASCVRSADVD GDGDRDLFVG ARVVPGRYPE TPVSHLLLND GKGHFTDKLS PILAQLGMVT 
DAAFADLTHD GRPELIVATD FGAVQAFSYK GETLHRLDNL LPPTTGCWNR LLVQDINNDG 
KPDIIAANAG LNSQLQATTD RPLTLYGIKN TAGALLPVLA GYDRNNAADK QPYPFNARDE 
MLDQVVSLRK KFTDYTSYSK ATITDLFGPD ELKQAQKLEA STLQSGIFMS DGGQTPSFTW 
QPLPIEAQTA PAYALATVDV NHDGLPDLII GGNREYNRVR LGKDDANRGQ LFLNRGKGRF 
IYVPMAASGL LWDGDVRDFA TVNVAGRTDL LVGASGRSVR GFTLSR