Gene Slin_3960 details

Gene Information

• Locus tag: Slin_3960
• ID: 8727718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 4752627
• End bp: 4756055
• Gene Length: 3429 bp
• Protein Length: 1142 aa
• Translation table: 11
• GC content: 54%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003388749
• Protein GI: 284038819

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCAAAAC GAGTACTTTA TCAAAAGACT TTACAGAAAA TCATGCGCAT TGGCATCTAC 
CAGGCCTTTC TTTCTGTCGC TTTTGCCACC TTCTCCTACG CCGTCGAGGT TAGTGGGCAG 
AAAGTGCTGG AGCAAAAAGT AACCCTTCAA CTGTCCAACG CCGATGTTGA AAAAGTGCTG 
GACAAAATTG AGACCGTTAC GAACGTCAAA TTTCTGTACA ACCCGCAAAT CTTCGGGAAC 
GACACCAAAG CCACCTATAA ATTTCGCAAC GAGCCGCTCT CCGATGTTCT GAACAAGATT 
CTAAACCGGT ATCAGGTTAC CTACGAAGTA CTCCAGGACC GGATCATTCT GAAACGGCTG 
GAGTCGTTCG AAATCAGAGT ACCCGTTCAG CAGGAAGCCC CCAAACGGAA AGTAGCGGGT 
ATCGTTCTCG ACGAAAACGG GGCCGGATTG CCGGGCGTGA GCGTCGTAAT CAAAGAAGCC 
CAGAAAGGGA CCACCACGGG TGCTGACGGC CGTTTTTCGC TCGATGTCCC AGACGATAAC 
GCTGTACTGG TGTTCAGCTT TGTGGGCTAC AAACGGCAGG AAGTTACCCT AGGTAACCAA 
AGCAACCTCT CGGTAACGCT GGCTCCGGAA GCTAGCACCC TCGGCGAAGT GGTGGTAACG 
GCCCTCGGTA TTGCGCGGGA GAAAAAAGCC CTCGCCTATG CCGTGTCGGA AGTGAAAGGC 
AGCGAGTTTA CACAGGCCCG CGAAAACAAC GTGGCCAACG CCCTGACGGG TAAGATTGCC 
GGGGTCAACG CAACGGGTAT GGCGACCGGC CCCGGTGGAT CAAGCCGCAT CATCATCCGG 
GGTAATGGCT CCCTGAACGG CAACAACCAG CCGCTGTACG TCATCAACGG GATGCCGATG 
GATAACAGCA CCCCCGGCGG CACACAAGCC GACGGCAACG GCATGAACGT TGACCGGGGT 
GACGGTATCG GCGGTATCAA CCCCGACGAT ATCGAGTCCA TCAGCGTACT CAAAGGTGGT 
CCCGCTGCGG CTCTGTACGG AGCCCGTGCC TCCAATGGCG TTATTCTGAT TACGACAAAA 
AAAGGCCGCG CTCAGAAAGG TGTCGGCGTA GAGATTAACA GCAATACGAC CTTCGAAGAC 
ATCGCCGTGA TTCCAAATTG GCAGTACGAA TACGGCCAGG GACTCGATGG CAGAAAACCA 
ACCACGGTAA CGGAGGCCAA AAGCACCGGC CGACTGTCTT ACGGGGCCAA AATGGATGGG 
CTACCCACAA TTCAGGTGGA TGGGCAAATG CACCCCTATT CGCCCCAGAG AAACAATCTG 
AAAAACTTTT ACCGCACAGG CACCAACTAC ATTAACTCGC TGGCCTTCAC CGGCGGCAGC 
GAAACGGTAA ACTTCCGGCT GGGACTCAAC AACACCCAGT CGAACAGCAT CGTACCCAAC 
TCGTCGTTCT CCCGGCGGAT CGCCAACCTG AACCTGAACG CGTTTCTGGG CAAGAAACTG 
AGCGTTGAAA CGGTATTCCA GTACAACGTG GAAGAGGGCA TCAACCGACC GAAAGTTGGG 
TATGCCGACT TCAACCCGCA CTGGGCCACT TACCTAATCG CCAACGTGGT CGACATTCGT 
AGTCTGGCAC CGGGATACGA CCCCGTGACG GGCAAAGAGA TGGAATGGAA CCCTGTTCCG 
GCCGCGCCGA ACCCGTATTT TGTGATCAAC AAGTTTAAGA ATAACGACAC CAAACACCGG 
TTTATCAGCC AGGGAAGCAT CCGCTACGAT ATTCTGGACA ACCTGTTCCT CAAAGGCAGC 
GTCAGCCAGG ACTTTTACAG CTTTTCGTCG GAATACGTCC AGCCTACCAA TAACGCCTAC 
CAGCCGCTGG GCACCTACGA AGCCCGTAAA ACAAGCTCCT CGGAAACCAA TGGTATGCTG 
ACGCTGAACT ACAACACGAC CTTTTTTAAG GACCTTACCT TTTCAGCCCT GCTGGGCGGC 
AATGTCCAGA AAGCGATCTT CGACCAGACA ACCATAGCTG GCAGTGAATT TACGGTACCG 
TATTTCTACA GCTACACCAA CCTCGCGACA TCGACCACAA CGCCAACCTA CCTGAAAAGC 
GCCATCAATT CGGTGTTTGG CTCGGCCGAT TTCGGGTATA AAAACGTCGC TTATCTGACG 
CTGTCGGGTC GGCAGGACTG GTTCTCGGTG CTGAACCCGA AGAGTAACCA CATCTTCTAC 
CCATCTGTGG GCGGCTCGTT CATTCTGTCT GATGCGTTCC AGTTGCCCAA GGCGGTGAGC 
TTTGCGAAGT TGCGGGCGTC GTGGGCGCAG GTGGGTGGCG CTACGGTCAA CGCCTATCAG 
ATTTACCAGT ACTATTCCAT GCAGCAGGGC GGTCACAACG GTCGGCCGGT GCAGGTTTTA 
TCGTCCTCGC AGGTACCCAA CCCCGACCTG AAACCGCTGA CCTCGACTAC GTACGAGGGG 
GGTATTGAAG CCAAGTTCCT GAACAACCGG CTAGGTATCG ACCTCACGCT CTACAACCGC 
AAAACCACGG ACGACATCGT GACGACGAAC ATCGCCCTGT CGTCGGGCTA CACCTCGGCG 
CTGTTGAACG TGGGTGCGTT GAGTAACAAA GGCGTTGAGC TGCTACTGAC TGGCACGCCC 
GTCAGCAAAG GGCCTTTCTC CTGGGATGTT AGCTACAACA TGGCCTACAA TAAGAGCAAG 
ATCGAACAGC TGGCCGCAGG CATCACCGGT ATTGATGTTG GTGCGGGCGT AGGCGGTGGT 
CTGGTTCGGA ACGTACTCAA CCGGCCTTAC GGCACCGTTT GGGGCTACAA CAAGAAGACC 
GACGCCAACG GCAATGTGGT CTTTAACACA GCCAGCGGGT ATGCGCTTCG GGGCGATTTG 
CAGGAAATCG GGCAGGGCAC GCCCCCACTC ACGATGGGGA TCACCAACAA CTTCCGATAT 
AAGAACTTCT CGCTGAACAT CCTGGTCGAC GGTAAATTTG GCAGCATCGT TTACTCGAAC 
CTATACCAGT ATGCCTACCG CTTTGGTCTG CCGCAGGAAA CCCTGCCCGG CCGCGAAACC 
GGCATCACCG TCACGGGCGT AACCCCCGAA GGCAATCCGT ACAGCAAAAC ATGGAGCAAG 
GAAGAGGTCG ATACGTACTA TGACAACGAC AAGAACTACA CCGCCATGTT CATGTTCAAC 
AACGATTTCG TGAAGCTGCG TCAAGTGATC CTCAGCTACA ATCTGCCCGT TGCCAAACTG 
CCCTTCCTGA AGCTACAATC GGCCACGATC TCGTTTGTAG CGCGTAACCT GGCTATTCTC 
TACAAGGATA AAAAGAATCA GTATTTCGAT CCGGAGTCGG GCTATACGAG CACCAACGCA 
CAGGGGCTGG AGGCTTTCGG CGTACCCAGA ACCCGCAGCC TGGGTGTGAA CTTAATGGTG 
AAATTCTAA 

 

Protein sequence

MSKRVLYQKT LQKIMRIGIY QAFLSVAFAT FSYAVEVSGQ KVLEQKVTLQ LSNADVEKVL 
DKIETVTNVK FLYNPQIFGN DTKATYKFRN EPLSDVLNKI LNRYQVTYEV LQDRIILKRL 
ESFEIRVPVQ QEAPKRKVAG IVLDENGAGL PGVSVVIKEA QKGTTTGADG RFSLDVPDDN 
AVLVFSFVGY KRQEVTLGNQ SNLSVTLAPE ASTLGEVVVT ALGIAREKKA LAYAVSEVKG 
SEFTQARENN VANALTGKIA GVNATGMATG PGGSSRIIIR GNGSLNGNNQ PLYVINGMPM 
DNSTPGGTQA DGNGMNVDRG DGIGGINPDD IESISVLKGG PAAALYGARA SNGVILITTK 
KGRAQKGVGV EINSNTTFED IAVIPNWQYE YGQGLDGRKP TTVTEAKSTG RLSYGAKMDG 
LPTIQVDGQM HPYSPQRNNL KNFYRTGTNY INSLAFTGGS ETVNFRLGLN NTQSNSIVPN 
SSFSRRIANL NLNAFLGKKL SVETVFQYNV EEGINRPKVG YADFNPHWAT YLIANVVDIR 
SLAPGYDPVT GKEMEWNPVP AAPNPYFVIN KFKNNDTKHR FISQGSIRYD ILDNLFLKGS 
VSQDFYSFSS EYVQPTNNAY QPLGTYEARK TSSSETNGML TLNYNTTFFK DLTFSALLGG 
NVQKAIFDQT TIAGSEFTVP YFYSYTNLAT STTTPTYLKS AINSVFGSAD FGYKNVAYLT 
LSGRQDWFSV LNPKSNHIFY PSVGGSFILS DAFQLPKAVS FAKLRASWAQ VGGATVNAYQ 
IYQYYSMQQG GHNGRPVQVL SSSQVPNPDL KPLTSTTYEG GIEAKFLNNR LGIDLTLYNR 
KTTDDIVTTN IALSSGYTSA LLNVGALSNK GVELLLTGTP VSKGPFSWDV SYNMAYNKSK 
IEQLAAGITG IDVGAGVGGG LVRNVLNRPY GTVWGYNKKT DANGNVVFNT ASGYALRGDL 
QEIGQGTPPL TMGITNNFRY KNFSLNILVD GKFGSIVYSN LYQYAYRFGL PQETLPGRET 
GITVTGVTPE GNPYSKTWSK EEVDTYYDND KNYTAMFMFN NDFVKLRQVI LSYNLPVAKL 
PFLKLQSATI SFVARNLAIL YKDKKNQYFD PESGYTSTNA QGLEAFGVPR TRSLGVNLMV 
KF