| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1489 |
|---|
| Symbol | |
|---|
| ID | 8725223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 1802337 |
|---|
| End bp | 1802900 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | pentapeptide repeat protein |
|---|
| Protein accession | YP_003386338 |
|---|
| Protein GI | 284036408 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0526071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTT GCGACCAGGT ATTCGACCAG ACTACGGACG AACCGCAGCA GTGGTTCCGC
CACAGTTTTG AGCAATGTAC CTTTAAAAAC CTCGACCTGT CTAAAGTAGC ATTCGGCGGT
ACGAGCTTCG TCAACTGCCG CTTCACCGAC TGTAATCTGG GCATGGCAGT ACTGGAGGGC
ACTAAGCTCG ACGATGTGCT GTTTATGGAT TGCAAGCTGA ACGGGGTAAA TTTCGGGCAA
TGCAACGCCT TCGGCTTCCA TGTCGATTTT CAGACGTGCC AGCTCGATTA CGCTTCATTT
TTCAATCGAA ACCTGAAAAA GACCCGATTT GTGGATTGCT CCCTGCGCGA AGCCCGTTTT
TTAAACTGCG ACCTGAGCGG GGCCTTGTTT AAAAACTGCA ACCTCGAACT GACGGTATTT
GCCACGAATA CGCTGACGCA AACCGACTTT TCGAGTTCGT ACAACCTGAG CCTGGACCCT
GACCAAAACA AGATCAGAAA AACAAAGTTT TCGCTGCATA GCCTTCCCGG TTTGCTAAAC
AAATATGACA TCATCGTTAC CTAA
|
|---|
| Protein sequence | MDFCDQVFDQ TTDEPQQWFR HSFEQCTFKN LDLSKVAFGG TSFVNCRFTD CNLGMAVLEG
TKLDDVLFMD CKLNGVNFGQ CNAFGFHVDF QTCQLDYASF FNRNLKKTRF VDCSLREARF
LNCDLSGALF KNCNLELTVF ATNTLTQTDF SSSYNLSLDP DQNKIRKTKF SLHSLPGLLN
KYDIIVT
|
|---|
| |