| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1436 |
|---|
| Symbol | |
|---|
| ID | 8725170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 1750604 |
|---|
| End bp | 1751224 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003386285 |
|---|
| Protein GI | 284036355 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.940915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.193535 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAA AAATAATAAG TAGTGCACTT GAGCAATTTT TGCGCTTTGG GATTCGGAAA
GTAACGGTAC AGCAAATTAT CTACCCGTTA GGTTTGTCGA CGAAGGCAGT GTACAAGTAT
TTTGGCAGTA AAGAGGAGCT GCTGGAAAAT TGTCTAGATG TACAGTACGG TAACCTACTT
CGGCAATTTA AGGCTATCGA AGCGAGAGAA AATAATCCGA TCTGGATACT ATTTAAGGTC
TATGGTAAGT TAATGGCGTT GGATTTTGAA ACTAGCCCAC TGTTTTACAA TGATTTGAAT
AGGTATTACC CGGACTTGCA GGACAAGGTC ATTCAAATTC ATTTTAACAA GTTTATTCTT
TTCTTCACAA ATATTGTTGA GGCCGGAAAG CAGCAGGGTT TCATTCAGCC TACATTACAT
ACTCCCGTAT TTCTGGTTAC GCAGAATGCC TTGTACCGAA TGCTAACCCG CTCAGATACA
TACCATCCAT TTAAACAGTC TCCTTTTTAT ACCGCTAACT ACACGATTGG TGTATACCTG
CGTGGTATTT GCACGATCAA AGGGATTCAG GAAATAGATG AAAACGAAGC GGCTCTTTCA
TTTACCAACT CGAAGCCATA A
|
|---|
| Protein sequence | MKEKIISSAL EQFLRFGIRK VTVQQIIYPL GLSTKAVYKY FGSKEELLEN CLDVQYGNLL
RQFKAIEARE NNPIWILFKV YGKLMALDFE TSPLFYNDLN RYYPDLQDKV IQIHFNKFIL
FFTNIVEAGK QQGFIQPTLH TPVFLVTQNA LYRMLTRSDT YHPFKQSPFY TANYTIGVYL
RGICTIKGIQ EIDENEAALS FTNSKP
|
|---|
| |