| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_17640 |
|---|
| Symbol | |
|---|
| ID | 8633400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 1967063 |
|---|
| End bp | 1969348 |
|---|
| Gene Length | 2286 bp |
|---|
| Protein Length | 761 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | predicted RND superfamily drug exporter |
|---|
| Protein accession | YP_003314525 |
|---|
| Protein GI | 269795070 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0285272 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCCT GCGTGTTCGA GAACCTAGGC CGTCGCATCA GCGACCACCC CCGTACCGCC
ATCTCCGTGT GGGCCGCGCT GACGACGCTC GGCGTCGCCC TGGCCCTCTT CGGGGTGCAC
GGCGAGAGCC TGTTCTCGCG GCTCACCACC GGCGACCCCG CGGTCGCGGG CTCCGAGAGC
TACGAGGGTC AGCGGATCCT CGCGACGGTC GACGAGGACG GCGAGGACGT CACGCTCATC
GTGGACAACC TCGCCCCGAC CACCGACGGC CTCGCCGAGG TGCTCGAGCC CGCCCTCGCG
GACGTCGCGG CGGTCGACGG CGTGGAGACG GTCCTCGACC CGGTGTCCTT GCCGGACGGC
CCCACGAGCC CCGCGGGAGC CCTGCTGACC GCCGCCGACG GCGACGGGTT CGTCGTCATC
GTCTCGGTGA GCGGCGACCT CACGGCCGAC CAGGCCTCGG CCACCGTCGC GGAGGTCGTC
ACGGCCCTCG ACGCCACCAC CGCGCAGCTC CAGGCCTTCG AGCCGGAGAC CACGGGCCTG
GTCGGCGCGA CATCGTTGGT CATCGATGCG ATCACCCACC AGGTCGAGCG CGACCTCACC
ACCGGCGAGG CGATCGCCCT CCCGGTCGCG CTGCTCATCA TGGTGCTCGT CTTCGGTGGG
TTCCTCGCCG CCGCGATGCC CATGGCCGGC GCGCTGGCCT CGATCGGCAC CGGCCTCGGC
GTGCTCCTCG GGCTGTCGTA CCTCATGGAG ATCGACGCCT CGATCGTCAA CGTGGTCACC
GTCCTGGGCC TCGGGCTGTC CATCGACTAC GGGCTGCTCG TCGTCTCCAG GTTCCGCGAG
GAGCTCGTCC GGCTCGACGC GCTCGCGCCG ACCGACGCGG ACGCCCCTCG GCGACGCAGC
CGCAAGGACA CCGTCGTCGC CGACGCGCTC GTGCGCACCA TGGCCACCGC GGGCCGCACC
GTCGCGTTCT CGGCCCTCAC GGTCGCGATC TCCATCGCGG GCCTCCTCGT GTTCCGCCCC
GACATCCTGC GCGCCATCGG CGCCGGCGGG GTGTCGATCA TCCTCGTAGC CGTCGCGACG
GCCCTGACCC TGGTCCCCGC GCTGCTGCGG CTCGCCGGCC GTCGTCTGGT CCGCCCCGGC
GTCCTCACCA AGGTCCCCGG TGCCGACCGC GTCCTGCGCC ACACCGCGGC CGTCGACCGC
GACGAGGGCG TCTTCTCCCG GCTCGCCGAG CGCGTCCAGC GCCGACCCGG CTGGGTCGCG
GCCGGGTGCG TCGTGGTGCT CCTCGGCCTG GCCTCCCCCG CCCTCGGCCT GCAGATGCGC
AACTCCGGGA TCGAGATGCT CCCGGCGTCG TCGGACCAGC GCCAGTTCGT CACGCGGCTC
GCCGAGCAGT TCCCCTCGAC GTCGTCGCCC GAGATCGTCG TCGTGGCCGA CGTGGACATC
ACCGACCAGA TGACCGACGG GTCGATCACC GGCCCGCTGG CCGACTGGGG GGTGGACGTC
ACCGCGATCC CCGGCGTCGA CACCGTCTCG GCGCCGGTAC CCGAGGGCAG CTACTCCGTC
GTCGGCATCA CCCTGGACTC GGGCGACGCG GGCGGCCAGG AGGCCCTCGA CGTGGTCGCC
GAGATCCGCG CCCTCGACCC CGGCTTCGAC ACCTGGGTCA CGGGCCAGGC GGCAGGGCAG
GCCGACTTCG TCTCGGCCCT CGCCGACCGG GTCTGGTGGG CGGTCGCGAT CGTGGTCCTG
GCGACCTTCG TGCTGCTGTT CCTCATGACC GGTTCCGTGG TCATCCCGCT CAAGGCGCTG
CTGACCAACG CGATCTCGAT CAGCGCCTCG ATGGGCATCC TCGTGTGGGT GTTCCAGGAC
GGGCACCTGT CCGGCCTGCT CGGCTTCACC TCGACCGGGG GCATCGAGAC CTTCGTGGTC
GCGCTCGTCG TCGCCTTCGC CTTCGGGCTC GCGATGGACT ACGAGGTGTT CCTGCTGTCG
CGGATCAAGG AGCTGTACGA CTCCGGGACA GACCCCGACA CGGCGGTCCG GCTCGGGCTG
CAGCGCTCGG GCCGCATCAT CACCTCGGCC GCGGCGATCA TCATCGTGGT CTTCGCCGGG
TTCGTGTTCG GCGAGCTGCT CATCATCAAG CAGGTCGGCT TCGCCCTGGC GGTCGCCGTG
CTCATCGACG CGACGATCGT CCGCATGCTG CTGGTGCCCG CGACCATGAC GCTGCTCGGC
CGCTACAACT GGTGGGCGCC GGCGCCGCTG CGCCGCGTGC ACGAGCGGCT CGCGATCATC
CACTGA
|
|---|
| Protein sequence | MLACVFENLG RRISDHPRTA ISVWAALTTL GVALALFGVH GESLFSRLTT GDPAVAGSES
YEGQRILATV DEDGEDVTLI VDNLAPTTDG LAEVLEPALA DVAAVDGVET VLDPVSLPDG
PTSPAGALLT AADGDGFVVI VSVSGDLTAD QASATVAEVV TALDATTAQL QAFEPETTGL
VGATSLVIDA ITHQVERDLT TGEAIALPVA LLIMVLVFGG FLAAAMPMAG ALASIGTGLG
VLLGLSYLME IDASIVNVVT VLGLGLSIDY GLLVVSRFRE ELVRLDALAP TDADAPRRRS
RKDTVVADAL VRTMATAGRT VAFSALTVAI SIAGLLVFRP DILRAIGAGG VSIILVAVAT
ALTLVPALLR LAGRRLVRPG VLTKVPGADR VLRHTAAVDR DEGVFSRLAE RVQRRPGWVA
AGCVVVLLGL ASPALGLQMR NSGIEMLPAS SDQRQFVTRL AEQFPSTSSP EIVVVADVDI
TDQMTDGSIT GPLADWGVDV TAIPGVDTVS APVPEGSYSV VGITLDSGDA GGQEALDVVA
EIRALDPGFD TWVTGQAAGQ ADFVSALADR VWWAVAIVVL ATFVLLFLMT GSVVIPLKAL
LTNAISISAS MGILVWVFQD GHLSGLLGFT STGGIETFVV ALVVAFAFGL AMDYEVFLLS
RIKELYDSGT DPDTAVRLGL QRSGRIITSA AAIIIVVFAG FVFGELLIIK QVGFALAVAV
LIDATIVRML LVPATMTLLG RYNWWAPAPL RRVHERLAII H
|
|---|
| |