| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_05730 |
|---|
| Symbol | |
|---|
| ID | 8632210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 645656 |
|---|
| End bp | 646597 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | carbohydrate ABC transporter membrane protein |
|---|
| Protein accession | YP_003313367 |
|---|
| Protein GI | 269793912 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.709273 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAG CACCGCAGGC GCCAGCACCC CTGCTCGACC GTGTCGAGCC GGTCTACCGG
CCGTCCGGCA AGCGCCCCGT CTGGATGGGC ACCCCCTCGC CGGGGGTGCA GCTCCTCAAG
GCGATCACCA TCGCGCTCAT CGTCCTCGTC ATGCTCTACC CCTTCGTGTA CGTCATCGCG
ATGAGCTTCG CCTCGCGCGA GGCCGCGGCG TCGGGCGGGT TCTTCCCGAC GACCTTCTCG
CTCGACGCCT ACCGGTCGAT CCTCGGCGGG GACGTCGTCA CGCGGGCGAT GCTCGTGTCG
ATCGGCATCA CCACCGTGGG CACCACGCTG TCGATGATCT TCACCACGAC GCTCGCCTAC
GGGCTCATGC GCACCAAGGA CGTCCCGGGG GCCAAGACGA TCCTCGTCAT GGTCCTGTGC
ACCATGCTGT TCGGCGCCGG GATCATCCCG AACTACCTGC TCGTGCGGTC GCTCGGGCTG
CTCGACTCGT ACTGGTCGCT CATCGTCCCG GGGCTCATCT CCGCCTTCAA CATGGTGGTG
GTGCGCAACT TCTTCATGGG GCTGCCCAGC GAGCTCTTCG AGTCGGCCCG GCTCGACGGG
GCGAGCGACT GGCGGATCTT CACGCGCATC GTCATCCCGC TGTCCAAGGC GGTGCTGGCC
GTCATCGCGC TGTTCTACGC GGTCGGGTAC TGGAACTCGT TCTTCAACGC GATGATCTAC
CTCAACGACA CGTCCAAGTG GCCCATCCAG GTGGTCCTCA ACCAGTACGT GGTCCAGGGC
TCGGCGCTCA CCTCGATCCA GGCACCGGAC CAGCCGCCGC CGCCCGGGCA GACCCTCCAG
ATGGCCGTCA TCGTCGTCGC GACGGTGCCG ATCCTCATGC TCTACCCCTT CGCCCAGCGG
TACTTCACCA AGGGGGTGCT CACCGGGGCG ATCAAGGGCT GA
|
|---|
| Protein sequence | MTAAPQAPAP LLDRVEPVYR PSGKRPVWMG TPSPGVQLLK AITIALIVLV MLYPFVYVIA
MSFASREAAA SGGFFPTTFS LDAYRSILGG DVVTRAMLVS IGITTVGTTL SMIFTTTLAY
GLMRTKDVPG AKTILVMVLC TMLFGAGIIP NYLLVRSLGL LDSYWSLIVP GLISAFNMVV
VRNFFMGLPS ELFESARLDG ASDWRIFTRI VIPLSKAVLA VIALFYAVGY WNSFFNAMIY
LNDTSKWPIQ VVLNQYVVQG SALTSIQAPD QPPPPGQTLQ MAVIVVATVP ILMLYPFAQR
YFTKGVLTGA IKG
|
|---|
| |