Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3670 |
Symbol | |
ID | 4254880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4370498 |
End bp | 4372324 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638124358 |
Product | diguanylate cyclase |
Protein accession | YP_739707 |
Protein GI | 114049157 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCACC AACATCATTC CATCAGCCAT AGAATGACAC TCACTATTAT TGGTGTGAGT TCGTTTTTTG CTGTCCTGAC TATGTTGATA CAGTTGATAT GGAACTATCA GGAGAGCATA GATAACACTA CTGCGGATAT TCGCGAATAC TCTGAATCTA TCTTACCTAC AGTGGCTAAA TCACTTTGGG ATGTTGACCA TGGTTTGTTA TCGGATTTGC TGTCCGGCCT AGGGATGATG CCCATGGTGG CGAGCGTTAA TCTGGAAAGT GTGGATGGTG TGACGATACA AATGGGAAAA TCCATAGGCG CCCATCATGA TGCAAAGCAA AGCTTGTTCT ATTATCCGGT CAAATATCAA GATCAGCAGA TAGGTATGCT GATCGTGGGC TTAGATACTA ATAAGTTGTA CTACGAATTG TGGCAGCAAC TGATTATTAT CGTGTTAGGT AACGGGCTTA AAACCCTGAT AATGATTTAC CTCATCCTCA CACTGGTACG CTTATTGGTC ACCAACCGCT TATCGGCGTT GGAGCGGTTT GCCAATCAAA TTAATTTGAA CTCCCTACCT AAGCTCAATG TGCCCATGAC TGTGATGCAA AGCTCCGATG AGATTGGCCA TGTCGCCCAG TCGCTACAGG CCATGTATCA ACGCATCCGT AATGATTTGG CGATCAATAA GCGCCAGCAA CGTGCGTTGA AACAACAGCA AAACCAGTTG GCGAAATTGG TCGATGAGCG GACTCAAGAG CTCAATTGGC AATCCAAGGC GAATCAGCTA TTAGCCGAAA TGTCGTTGCA ATTTTTGACG ACAGATACTT CTAAACTCGA CGAATCTTTA GCCGAGGTGT GCCGTCGCAT TGGTAATTTA TTTGATGTCG AACGGGTGAG CATCATTGAG TTTACCCAGC TACATGCCCG TTATCGCAGT TTTTGGAGTT GTGAGTCGCA GGCGGATCTG GTCCAAGATA TTCCTGTCGA TATTGCGGCA GTGCTGGCAC AGAAATTTGT ATCAGAGTCG ACATTAGTTA TTGAATCAAT AGATTATTTA AAAGATGAAT TCCCAGAGGA ATATCAGGCC ATGTGTTCGG TTGGTATCTG CTCTATTGCT GCCTATGCGA TTAAAAATGC CGATGAATTA TTAGGTTTAC TCTCGCTGTC TATGATCAGC CGCCCATTAA ACTGGAGTGT GCAAAAGAAG GTGATGCTGA CGCAATTTGC GGCGGCACTG AACGAATTAT TGCTGCGGGA GGAAAAAGAG CGACAGATGC TCAGCCTGCA ACAGGCCTTA GTATCGGTAA ATACCCAGCT ACGAGTTATG GCCGAGACGG ATGAATTAAC CGGATTAAGT AACCGCCGCC CCTTCACCCA AACCTTAGAA GCCTTACTAC AACAGCGGGC GCCTATAGGT TTACTGATGT TAGATATCGA TTATTTTAAG AGTTACAACG ATACCTACGG ACACCTCGAG GGGGATGAGG CGCTTAGGCG AGTGGCACAG GCGTTAATGC AATCAGGCAT CTTACCGCTG GACAGTTTGC TCGCCCGTAT TGGTGGAGAG GAATTCGCGA TTATCCTTGA GCACATTACC CCTATCCAAT TGGAGGCGAT AGCAAACCAG CTCTGCTATC AAGTTGCCGC GTTGGATATT CCCCATAGTA GTTCTCCAAA GGGTAAGATT ACTCTCAGTA TTGGTGGCGT ATATTTGCCT CTTGCTACGA TCAATAAGCT TACGCTGTCA GAAGTGTTGC GCCGTGCCGA TATTTGCCTG TATCGCGCTA AAGATCAGGG GCGTAATACT GTGGTAATCG ACTCGAACCG CAACTGA
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Protein sequence | MKHQHHSISH RMTLTIIGVS SFFAVLTMLI QLIWNYQESI DNTTADIREY SESILPTVAK SLWDVDHGLL SDLLSGLGMM PMVASVNLES VDGVTIQMGK SIGAHHDAKQ SLFYYPVKYQ DQQIGMLIVG LDTNKLYYEL WQQLIIIVLG NGLKTLIMIY LILTLVRLLV TNRLSALERF ANQINLNSLP KLNVPMTVMQ SSDEIGHVAQ SLQAMYQRIR NDLAINKRQQ RALKQQQNQL AKLVDERTQE LNWQSKANQL LAEMSLQFLT TDTSKLDESL AEVCRRIGNL FDVERVSIIE FTQLHARYRS FWSCESQADL VQDIPVDIAA VLAQKFVSES TLVIESIDYL KDEFPEEYQA MCSVGICSIA AYAIKNADEL LGLLSLSMIS RPLNWSVQKK VMLTQFAAAL NELLLREEKE RQMLSLQQAL VSVNTQLRVM AETDELTGLS NRRPFTQTLE ALLQQRAPIG LLMLDIDYFK SYNDTYGHLE GDEALRRVAQ ALMQSGILPL DSLLARIGGE EFAIILEHIT PIQLEAIANQ LCYQVAALDI PHSSSPKGKI TLSIGGVYLP LATINKLTLS EVLRRADICL YRAKDQGRNT VVIDSNRN
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