Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2119 |
Symbol | |
ID | 4255534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2506828 |
End bp | 2509500 |
Gene Length | 2673 bp |
Protein Length | 890 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638122787 |
Product | TonB-dependent receptor |
Protein accession | YP_738164 |
Protein GI | 114047614 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.817127 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00248227 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTACGC AAACAACCGT GGCGCGTGCG GTTCGTTTTA GTTTACTCGC TTTAGTCTCC GCCTCGGTGA CACCGCAAGT ATTTGCCGCC GATGAAGCGG CCGTTATCGA TGATAAAGTG GAGCGTATTG AGGTTACGGG TTCACGTATT AAACGTACCG ATCTTGAAAA TGCCTCCCCT ATCGTGGTGG TGAGCGCCGC AGATATCGAA AAAGGCGGCT TTAACTCAGT GCAAGACGTG TTAGGCAACC TGTCGCAAAA CTCCGGTGGG TCGATGACTC AACAGGAAGT GCACGGCTTT ACCCCAGCAG CATCTGCCGT CAACCTTCGT GGTGTGGGCG CTGGACGTGT GCTGACGCTG ATCAACGGTA AACGTGTGCC TAAATATCCC TTTGGCGCCG GTGGCACCGA CAGCTTTGTC GACACCGCCA ACATTCCGTT AGGGGCGATT GAGCGTATTG AAATTTTAAC CACGGGTGCC TCGGCCATTT ACGGCTCCGA TGCGATGGGC GGTGTAATCA ACATCATCTT GAAAAAAGAC GTTGAGCAAA GCACCTTCAA ATACCGCCAC TCAGATACCT TCGATGGCGG CCTGCAGAAC AGCCAGTTCT CCTTTATGAC GGGTGTCAGC AGCGATAAAG CGAATCTGAC TTTCTTCGCC GAATATGAAG ATCGCCAAGC ATTAAAAGCC TCAGATCGCC CTGAATGGGG CACTGATATT ATCCCGGGTA ACTATTATGC TGGTTACAGC TCCTATGGCG CCAACCTTGT GGATAGCAAT GGCAAACTAC TCAAGAGCTT AAGTGCCGCC GAATGTGATG CACGCGGCTA TGTGATGATG TCCAATGGCA AATGTGGTTT CGATCGCTCC GCACAGCGCG ACTTTTCGCC TGAGCAAACG CGCTACTCCA CCATGATTAA CCTCACCAAA GACTTAAACG ACAATCATCA GCTGTATTCG CGTCTCGATT ACACCCATGC CTCGACCTAC ACAGAAATTG AATCGGCCAC TGTGGGCGAC GATTTTATGT TTAACGTGTC GGGCGATAAC GTCACTATCG TCGATGAGCT CAATGGCTTA TCCCAAGTGT TCGATAAAAA TACCGCCTTC GGCGGAGATT TTGCCGGCGC TGCCGATGGG GACTATTACT ACACTCGCCG TATGTCTGAG TTAGGTCCAC GCACCTCTGA TTTTGAGACC AATAACTTCT CCTTCTTATT AGGTAGCAAA GGTTACCTCA CTGATACTAT CGAGTACGAC ACCTCGTGGT CGATTGCGCG TCAAACGGTA GACTCTACCA CCGCAGGTTC GCCAACCTAC CAAAGCATGT GGAACTACCT CACCGCGGGT ACTAACGGCA ATTCGTTACT GGATGTGATT TCACCGGACG ATGCCGCAAT GCTGGACTTC CAAGGCGGTA AAAAGGGGCA ATCCACCCTA TCGAGCTTTA ACGCAGGGAT CAGTGGCGAT GCCTTTGAAT TACCAGCAGG AACAGTAGCT TATGCCGTGG GCGTCGAATA CGGTAAAGAA TGGTTCTACG ATAAGTCCGA TAGCTTCACC AGCAATGGTG GCGTGATTGG TAAAGGCGGC AGTAGCGCTC AAGGTGAACG TGAGCAATAC GCAGGTTATG CCGAAGTCGC CGTGCCTGTG ATCGAAAACC TCACCGTTAC TCTTGCGGGC CGTTACGACT ACTATGACGA TTTATCCGAT GTCGGCGGTC AATTCAGCCC ACAAGTCGCA GTCGAGTATC GCCCGATTGA TAATCTGTTG TTACGCGGTC TGTATGCAGA AACCTTCCGA GCGCCAGACA TGCAGCGCTT ATTTGGTGAA CCAACGGCAG CCTATAGCAC AGTGATCGAC ACTCCAACCT GTGAGGCCGC GGGTGGCACG GGCCCTGCCT GTGAGAAGAT TGACTCACTG CCAATTACTA TCGGTGCAAA CCCAGAACTT GAAGCGGAAA CCGGTAAAAA CTATAACCTC GGCATGGTGT GGGATTATAA CGATCTCAAT TTAACCTTGG ACTACTGGAT TGTTGAAATC GATAACCTAG TCAATAGCCC AAGCGCCCAG TATATCTTGG ATCACTCTGA CGCCTTCGCC GATAAGATTT TCCGCGATGC AAGCGGCAAG TTAATTCAAG TGAATACTCA AGCCATCAAC ATGTCATCCC AAGAAACTTC GGGTATCGAC TTCTCGGTGG GCTATCGCTA TGAGACTTCA GGCTACGGCG ATGTCACCGC CCGCTTGGAA GGCACCTATT TGCTGAAGTG GGAAGAGCAA TTAACCCCAG ATTCTGAGCC TTTAGATCTG ATCGATGGTG ACGACTCTGC CCCGCAAATC CGCGGTAACT TAAATCTGGG TTGGAACTAC GATGACTTCG CTACCAACCT GCTGATCAAG TACACCGACA GCATGAATGG TCAGCGTAAA GAGGCATTCA TTAACAATGG CTTGGCGGAT AAATATGCCG TCACTATCGA CAGCCATGTC GAAGTGAACT GGGCCGCCAG CTATATGTTA ACCGATGCGA TTAAGTTCTC CGGCGGGATT AATAATATCT TCGATGCAGG CCCTGAGATT GATGAAACCC AAAACTCTTG GCCGCATTAC CCACGTTCTT ACTACAACGT TGTTGGGCGT GAATATTATT TAGCGGTAGA GATGAACTTC TAA
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Protein sequence | MTTQTTVARA VRFSLLALVS ASVTPQVFAA DEAAVIDDKV ERIEVTGSRI KRTDLENASP IVVVSAADIE KGGFNSVQDV LGNLSQNSGG SMTQQEVHGF TPAASAVNLR GVGAGRVLTL INGKRVPKYP FGAGGTDSFV DTANIPLGAI ERIEILTTGA SAIYGSDAMG GVINIILKKD VEQSTFKYRH SDTFDGGLQN SQFSFMTGVS SDKANLTFFA EYEDRQALKA SDRPEWGTDI IPGNYYAGYS SYGANLVDSN GKLLKSLSAA ECDARGYVMM SNGKCGFDRS AQRDFSPEQT RYSTMINLTK DLNDNHQLYS RLDYTHASTY TEIESATVGD DFMFNVSGDN VTIVDELNGL SQVFDKNTAF GGDFAGAADG DYYYTRRMSE LGPRTSDFET NNFSFLLGSK GYLTDTIEYD TSWSIARQTV DSTTAGSPTY QSMWNYLTAG TNGNSLLDVI SPDDAAMLDF QGGKKGQSTL SSFNAGISGD AFELPAGTVA YAVGVEYGKE WFYDKSDSFT SNGGVIGKGG SSAQGEREQY AGYAEVAVPV IENLTVTLAG RYDYYDDLSD VGGQFSPQVA VEYRPIDNLL LRGLYAETFR APDMQRLFGE PTAAYSTVID TPTCEAAGGT GPACEKIDSL PITIGANPEL EAETGKNYNL GMVWDYNDLN LTLDYWIVEI DNLVNSPSAQ YILDHSDAFA DKIFRDASGK LIQVNTQAIN MSSQETSGID FSVGYRYETS GYGDVTARLE GTYLLKWEEQ LTPDSEPLDL IDGDDSAPQI RGNLNLGWNY DDFATNLLIK YTDSMNGQRK EAFINNGLAD KYAVTIDSHV EVNWAASYML TDAIKFSGGI NNIFDAGPEI DETQNSWPHY PRSYYNVVGR EYYLAVEMNF
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