| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1027 |
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| Symbol | |
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| ID | 4258634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1188914 |
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| End bp | 1192021 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638121639 |
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| Product | TrwC protein |
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| Protein accession | YP_737083 |
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| Protein GI | 114046533 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.304384 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTCAC CCAAAGCAAT AAAAAGTGCC TCTCAGGCAG GTCATTACTT TGAAAAAGAC
GATTATTACG TTGATGGTTT GTCCCCGTCT GAATGGTTTG GCGACGGAGC GGAAACACTG
GGATTGTCAG GAGACGTAGA TAGAGAAACT TTCAAATTTC TTCTGGAGGG ACAGCTCCCA
GACGGGCAAA GACTTGGAAC TGTCAGAGAT GGCGAGTGGA AGCATCAACC TGGAATTGAC
TTAACGTTTT TAGCACCCAA GAGCGTTTCT ATTTTATCCG AGGTCGTGGG TGATCAGAGA
CTACTTAGCG CCCACGACAA AGCTGTACAA GTCGTTTTAC GCTATATAGA GCAAGAGTAT
ATTGTTACAA GGAACCGCAA TCGAGCTGAA AATACTGTTG AGTATGAGAA AACAGCTTCA
ATGGTTGCGG CAACTTTTAA GCATACAACC AGCCGCGCTT TTGATCCACT TCTGCATACT
CATGTGGTGG TTATGAATGC GACGCAGCGG GCGGATGGGC TATGGAGATC TATTGAGAAC
AAGCCCCTTT TCATCGACCA GAAGCACCTT GGCCTTATTT ATCGTCAATA TCTTGCGGAA
GAAGTGCAGT CTTTGGGCTA CGATCTTGAT CACGAAAAAG GTGGAACTTG GGAAATTGCG
TCTATTAGTA AAGAGGTCAT TCGCGAGTTC TCAAAGCGTT CAGAGGCAAT AGAGAAAGCT
CTGGAGGCTC GTGGGAAAAC ACGAGATTCA GCGACAGCCG CAGAGAAAGA AACTGCGACT
CTTGACACTC GGGATCGCAA GGTTCACATG GAGCGTGGCG AGCTTCTTGA AAAGTGGCAT
GCCGAAATCG GTGAAGACAA ACTTAACGAT CTGAAGAAGG TTATTCGACA ATCACAAGCC
AATCTCCCGA CGCTTGAAAT GAAAACGGAA GCTCTTCTGG AGCGTGTTAA AGTGGCAAAT
GAAGCCGTCA TGTGGGCGAT AGAACACCTT GGAGAGCGTG ATACATCTTG GACGCACCAT
GATCTAGTCA AAGAGGCGAG TCGTTATGCC GGATCGCGAG TACTACTTTC TGATGTTAAC
AATGCGATTG ATGCTGCAAT TGGCAGTGGT CAGCTCATAG ATAAGTCGGT TAGAACCTTT
GATAAGGTTA GCAAGCGAGA GATTGATGTG CGGGGATATA CGTCGAAAGC GGCCATCGAC
ATCGAGGATG AGGTACTCAA GGAAGAATAC CTTGGCCGCG ACCGTGTTCA GGCATTATGC
AGCCGGGAAC AGGCTGCTGC GGCCATTTCC AATGCTGAGG AGAAGGCCAA CGAATTTGGA
TATGAGTGGA ACGCTGACCA ACGGAAAGCT ACTGAGGGCA TTCTGCTCTC CGAGAATCGG
ATCATTGGAG TGCAAGGGTT CGCCGGTACG GCTAAAACTA CCTCCGTCCT CCGAACTGTA
GCTGAGACAG CAAGGGATAT GGGGTATGAG GTTAGGGGGC TTACCCCTAC GAATTCTGCT
GGTCAGAGTT TGATTGATGG TGCTGGAATT CAGTCTGGAA CAATTCAGTC TTTTCTGGCA
CAAAACCGCA ACGAGTGGGT TCAAGAACGG AAAACTCATA CCCAGATCGA TAAAATTGAT
AAGCGGTTAG AGCAAATCGA AAAAGCCCTC TCCAATCCGT ATGTTGATGA AAAGACTGGG
GTTCGGATTC CCGAGAATTC GCCGCTCTAT CAGAAACGAC TCGACGAACT CCAATATGAA
AGATCAGAGT TACAGGGAGA ACGTGACGGT CTTGGGAAAA TGTTGGAAAA AACTCCTCAA
CTTTGGATTG TGGATGAGTC CAGCATGGTA GGCACCAAGC TAATGCGAGA CCTCTTGCAA
CGTGCGGGGC AATCGGGGGC TCGTGTCGTA TTGACCGGTG ATGTTCGTCA GCTAGCCTCA
GTCGAAGCTG GTGCTGCTTT CAGGCAGCTT CAAAATCACG GGATGGAAAC CTATCATCTA
GAAGAAATCG TTCGGCAGAC GAACCGAGGT ACTCGGGATG CGGTGTATCT CTCCCTTATG
AAGAATGCCT CTCACGCTCT CAGTCGATTA GAGGAGAGCG GTAGCACGAT AAAGGAAGTG
GTCTCTCATA AAAAAAACGG AAAAATCGAC CATGAGAAAA GCGGTGAAGC CCGCAGACAA
GAGCTTGTGA CGGACTACAT GGCTCTTGCG CCGCAGGAAC GAGCCAAAAG TATTATCCTC
GAACCAAGCC GAGAGGGCCG CCGTCGGACC AACGAGTTAG TTCGTGAGGC CTTAAAAAAA
GAAGGAGCTT TGGGCGAAGA GCTCCGAATT AATCAGCTAT CACCAGTCGA TGCAACCGAA
GCTGAACGGC GTGTTGTGAC ATCGTATCAA AATGGGCAAA TCGTCCGGTT TGCGCGTAGC
TTCAAGCGTG AGGGCATCAA GAAGGGCCTG TATTATCAGG TTGTTGGGCG AGATAATAAC
GATATCTTGC TTAAGAAGTT CGGGGCCAAT GAGCAGGCTG AGCTGATTCG CTTCTCCCCT
GAACGCTATG CGGCCAAGAA CATCCAGATG TTCAACCTAA CTGAAAGTGG TTTGGCCGTT
GGTGAGACGA TCGTCTGGCG TGATAATGAT AAGCCGACTG GGCGATTGAA CAATGACACC
GCCACAGTTG AGAAGATAGA AGGCACGAAC GTAACCTTCA GACTTTCCAG TGGGAAAACC
GGTGAGTTTG ACATGTCCAA ATTGGCTAAT TCCCATTGGG ACCACGGTTA CGCCATGACT
GTTCACGCTG CCCAGGGAAA GACAGCCCAG AACGTATTTG TTCACGCCGA AACCAGCCGA
GAATCTTTAT TGAACACAGA ACAGTTCTAC GTGCAGATAT CAAGAGCAAA GGACCGCGTG
TATCTCTATA CCGATTCAAA AGAAGGGCTG GTTCGAGCTG TAGAGCAGCG TTCAGGGCAA
AAACAAACGG CTAAGGAAAG CAGTTACCAG TCTCTGGAAC CGCTTGACCA CTTGATTGAT
AAGCTATGGC AGTATCCAGA ATCAGGACGC TCGTTAGAGC AATTAGCGGA TAGGGTTCAA
GAACGCGAGA AATCAAGAGG TGACAGACAG CATAGTCTAA CAAGATGA
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| Protein sequence | MMSPKAIKSA SQAGHYFEKD DYYVDGLSPS EWFGDGAETL GLSGDVDRET FKFLLEGQLP
DGQRLGTVRD GEWKHQPGID LTFLAPKSVS ILSEVVGDQR LLSAHDKAVQ VVLRYIEQEY
IVTRNRNRAE NTVEYEKTAS MVAATFKHTT SRAFDPLLHT HVVVMNATQR ADGLWRSIEN
KPLFIDQKHL GLIYRQYLAE EVQSLGYDLD HEKGGTWEIA SISKEVIREF SKRSEAIEKA
LEARGKTRDS ATAAEKETAT LDTRDRKVHM ERGELLEKWH AEIGEDKLND LKKVIRQSQA
NLPTLEMKTE ALLERVKVAN EAVMWAIEHL GERDTSWTHH DLVKEASRYA GSRVLLSDVN
NAIDAAIGSG QLIDKSVRTF DKVSKREIDV RGYTSKAAID IEDEVLKEEY LGRDRVQALC
SREQAAAAIS NAEEKANEFG YEWNADQRKA TEGILLSENR IIGVQGFAGT AKTTSVLRTV
AETARDMGYE VRGLTPTNSA GQSLIDGAGI QSGTIQSFLA QNRNEWVQER KTHTQIDKID
KRLEQIEKAL SNPYVDEKTG VRIPENSPLY QKRLDELQYE RSELQGERDG LGKMLEKTPQ
LWIVDESSMV GTKLMRDLLQ RAGQSGARVV LTGDVRQLAS VEAGAAFRQL QNHGMETYHL
EEIVRQTNRG TRDAVYLSLM KNASHALSRL EESGSTIKEV VSHKKNGKID HEKSGEARRQ
ELVTDYMALA PQERAKSIIL EPSREGRRRT NELVREALKK EGALGEELRI NQLSPVDATE
AERRVVTSYQ NGQIVRFARS FKREGIKKGL YYQVVGRDNN DILLKKFGAN EQAELIRFSP
ERYAAKNIQM FNLTESGLAV GETIVWRDND KPTGRLNNDT ATVEKIEGTN VTFRLSSGKT
GEFDMSKLAN SHWDHGYAMT VHAAQGKTAQ NVFVHAETSR ESLLNTEQFY VQISRAKDRV
YLYTDSKEGL VRAVEQRSGQ KQTAKESSYQ SLEPLDHLID KLWQYPESGR SLEQLADRVQ
EREKSRGDRQ HSLTR
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