| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1026 |
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| Symbol | |
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| ID | 4258633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1186944 |
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| End bp | 1188917 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638121638 |
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| Product | hypothetical protein |
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| Protein accession | YP_737082 |
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| Protein GI | 114046532 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.272564 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACAA TTAGAAAAGG CCGGATAGGG GATTTTGTTC GCGGAGCGGA TACATGGCTT
CACAGTCAGC AGATGTTGTT ATTCAGTGGG ATTTGGATCT TTTTGCCTGG TGTTTTGTTG
GCGATTGTCG GGGGCCTATT ATATCTCTGG ATAGACGCCG ATAAATGTGT CTTGCAAAAC
ACTAGTACAT ATCTTTGGGC ACAATTGAAG GGATTAGTAC AACCATTTTC AAGCGTGACT
GTAGGAACCT GTGTTGCCCT AGATGGGCGC GAATCTCTGC CATCCTCTGT GGTGATAAAT
GAACCACTAT TCCAGGAAGC TGCTGTTAAG CTTCTCAAAT CCTTTGGATG GGCTTTCAGT
TCGCTCTTTG TATTGTACTT GCCTATTGGT GTTTATCTTG TCGTTAAGGC AGTTAAAAGA
GGTAAGGAAA TCAAAGAAGA CAAATATATT CGAGGGGCGA AACTTGTTTC ATCCGAAAAA
TTGAAAGGAG AAATCGTAGA AAAGCACGGT GCTTCTGATT TAACCCTTGG CGATTTTCCC
TTACCTACAG GATTTTCAAA AAAGCACACC TTGATTAGTG GCACCACGGG TGCCGGTAAA
TCTACAGCAC TAACTCATTT ACTTAAAGCT ATTCGTGCTC GTGGCGACAG AGCCGTGGTA
TATGACAAGA AGGGTGAATT CGTAGAAATG TTCTATCGGG ACGGAGTTGA TCACATACTC
AATCCGGCAG ATAGCCGATC ACATCAGTGG ACTCCTTGGG AGGAAATGGT TTCGCCATTT
GATGCAGACT GGATAGCAGA AACTCTTATT CCAGAGAGCA AGTCCAATGG TGGAGACCCA
TTTTTCAGAG ATTCCCCTCG CCATGTGTTT TCCGCAGTTT TACAGAAACT CTATCTGGAT
GGCTTCCGAT CTTTAACTAC GCTTTTGCAA GCTACTGCTT GGAGTGATTT GGAGCTATTA
ACAGAATTAG TTGCAGGGAC ACCTGCTGAA ACCCATTTTT CCGAAGGTAA TGAGAAGACG
TTGGCAAGTA TTCGTTCAAC CCTTGTCAAT GGTGTCTTGC CACTTCGATT GTTGAAAGAG
TGTGACTCTC GTGGATTTTT CTCCATCCGC GATTGGATTG CTCAAGGCGA CGAACAAGGT
GCTGATGATT CATGGCTTTT CCTACCGGTA AGGGAATCTG AAATTGAGAT TCAGAAGCCT
CTAATTTCGA CGTGGATTCA ATCAGTGGCT AAGGGATTGA TGGCGTGTGG TGTCAATAAT
GATCGAACGC TTTGGATTGT TGTCGATGAG CTACCAAGTC TCAAAAAAAT TCCTGCTCTT
TCAATGTTGA TGGCCGAAGG GCGTGGCTTC GGTGCGGCTG TTGTTTTGGG TATTCAGGAA
ATAAACCAGC TAGAGGAAGA GTTTGGAAAA AATACCTCTA AAACCATACT TGGCTTGTGC
TCCACGCAGC TTCATTTCCG TTTGAATAAT GCCGATACTG CGGAATGGGT CTCCAAAGTA
CTTGGTGAAG CTGAACGTGA GGAAGTTGAT GAGGACTTAA ACTACTCCGC TGATGATATT
CGAGACGGAG TTCGGGTCAG TTCTAAACGT CAAAACCGAA AAATTGTTCT TCCCAGTGAA
ATCATGGACC TACCTGATTT GTCTTGTTTT GCCAAAATTT GGGGCGTGGA GAGTAAAGCC
CGTATTGATA TTCCTTTCTT GAGACTTCCA AAGATCGCTG ACGGTTTTAT TCAAGGTGAT
GAGAATGAGA CAGTTGGTAT GCGTCTGCTC AATGCCGCAC GGGCCTTGAA AATGGAAGCT
GATACTGACT TTGCTCCGAA AGAACTTTCC AATAAGCATG GTACTGAGGT GTCTAAAGGG
CAATTACCAG CCCTAAGTGA TATAGAACAG GAAGTACATT CAGTGTTGGG AACGGATGGA
ATGGATGATG ATTTGGTATT TGGCCTGCTT GGAACAGGAG GCAAAAAATC ATGA
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| Protein sequence | MATIRKGRIG DFVRGADTWL HSQQMLLFSG IWIFLPGVLL AIVGGLLYLW IDADKCVLQN
TSTYLWAQLK GLVQPFSSVT VGTCVALDGR ESLPSSVVIN EPLFQEAAVK LLKSFGWAFS
SLFVLYLPIG VYLVVKAVKR GKEIKEDKYI RGAKLVSSEK LKGEIVEKHG ASDLTLGDFP
LPTGFSKKHT LISGTTGAGK STALTHLLKA IRARGDRAVV YDKKGEFVEM FYRDGVDHIL
NPADSRSHQW TPWEEMVSPF DADWIAETLI PESKSNGGDP FFRDSPRHVF SAVLQKLYLD
GFRSLTTLLQ ATAWSDLELL TELVAGTPAE THFSEGNEKT LASIRSTLVN GVLPLRLLKE
CDSRGFFSIR DWIAQGDEQG ADDSWLFLPV RESEIEIQKP LISTWIQSVA KGLMACGVNN
DRTLWIVVDE LPSLKKIPAL SMLMAEGRGF GAAVVLGIQE INQLEEEFGK NTSKTILGLC
STQLHFRLNN ADTAEWVSKV LGEAEREEVD EDLNYSADDI RDGVRVSSKR QNRKIVLPSE
IMDLPDLSCF AKIWGVESKA RIDIPFLRLP KIADGFIQGD ENETVGMRLL NAARALKMEA
DTDFAPKELS NKHGTEVSKG QLPALSDIEQ EVHSVLGTDG MDDDLVFGLL GTGGKKS
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