Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3499 |
Symbol | |
ID | 4254065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 4185502 |
End bp | 4186347 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638120137 |
Product | AraC family transcriptional regulator |
Protein accession | YP_735622 |
Protein GI | 113971829 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCGC TATCAAGCTT AATTCAACAT GCGGCGCCGA AAGCCAGCCT ATTTTTCTCG GGCAATCTTT GCCAAAGTGC AGAGAGTGAG GAGCACGCGA ATGGTGGGCA GCTCCACTTA TTACGCCGGG GTGAATTGGG GCTACATCAA ACCGGCAGCG CAGTACAAAC TATCAGTGAA CCCACACTCA TCGTTTACCC TCGCGGTCGC CATCATAGAC TTCAGCCTCT GCATTTCAGC GGTTGTGATT TGGTCTGTGC TCGCTTAACT TTTCGAGATT CTCCACTATT TCGTGCGTTA CCTGACGCCT TAATCATTCC CTTAACCAAG CTTGAAGGGC TGGCTCCAAC CATCAATTTA CTTTTTGATG AAGCCTTTTC CCTGCGCTAT GCCCATAATG CCGTTGTCGC TAGTTTGTTG GATTTACTCT TACTGCTACT TTTGCGTCAT ATGGTCGAAC ACAATTTGTG TGAGTCGGGC TTACTTGCGG CCATGACGGA TCCCAAACTC GCCAAAGCTA TTGAGGCTAT CCATGCTAGC CCAGATACGC CGTGGACCAT TGCAGAATTA GCCAAGCTCG CAGGAATGTC GAGGGCGCAG TTTGCCGCTC GCTTTCATCA AGTGATCGGT CAGCCACCGC TAAGCTACGT GACTGAGTCA CGTTTATTAC TTGCACAGCA GCTATTGTTG GCGGGTCAGC CAGTTAAATT TATTGCGTTA GAAGTGGGAT ACAGCGGTGG CGTTGCTTTT TCTCGTGCTT TTGAGCGTCA GTTTGGTTTG ACGCCGACAC GCTGGTTACA ACAACAGAAA AGCATGGGGA CGGAGGCAAT TGAACCAACA AAGTAA
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Protein sequence | MDALSSLIQH AAPKASLFFS GNLCQSAESE EHANGGQLHL LRRGELGLHQ TGSAVQTISE PTLIVYPRGR HHRLQPLHFS GCDLVCARLT FRDSPLFRAL PDALIIPLTK LEGLAPTINL LFDEAFSLRY AHNAVVASLL DLLLLLLLRH MVEHNLCESG LLAAMTDPKL AKAIEAIHAS PDTPWTIAEL AKLAGMSRAQ FAARFHQVIG QPPLSYVTES RLLLAQQLLL AGQPVKFIAL EVGYSGGVAF SRAFERQFGL TPTRWLQQQK SMGTEAIEPT K
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